Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06485

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,418,314	+				+0.9
1,418,314	+				-0.6
1,418,314	+				-0.4
1,418,452	+		RR42_RS06480	0.21	-0.2
1,418,519	-		RR42_RS06480	0.30	-0.8
1,418,596	-		RR42_RS06480	0.41	+1.9
1,418,596	-		RR42_RS06480	0.41	+1.5
1,418,602	+		RR42_RS06480	0.42	-0.3
1,418,602	+		RR42_RS06480	0.42	+0.1
1,418,962	+				-0.6
1,418,962	+				-0.6
1,418,962	+				+0.7
1,418,962	+				+0.9
1,418,962	+				-0.6
1,418,963	-				+0.1
1,418,963	-				-1.9
1,418,989	+				-0.9
1,419,060	+				+0.7
1,419,061	-				-0.1
1,419,061	-				+1.5
1,419,067	+				+0.4
1,419,138	+				-0.8
1,419,138	+				-0.4
1,419,392	-		RR42_RS06485	0.25	-1.6
1,419,433	+				-0.5
1,419,433	+		RR42_RS06485	0.29	+0.0
1,419,440	-		RR42_RS06485	0.30	+0.1
1,419,440	-		RR42_RS06485	0.30	-0.7
1,419,451	+		RR42_RS06485	0.31	-0.5
1,419,451	+		RR42_RS06485	0.31	-0.3
1,419,553	+		RR42_RS06485	0.40	-1.4
1,419,576	+		RR42_RS06485	0.42	-0.0
1,419,576	+		RR42_RS06485	0.42	-0.9
1,419,576	+		RR42_RS06485	0.42	-2.2
1,419,576	+		RR42_RS06485	0.42	-0.5
1,419,576	+		RR42_RS06485	0.42	-2.2
1,419,577	-		RR42_RS06485	0.42	-1.2
1,419,577	-		RR42_RS06485	0.42	-0.9
1,419,682	+		RR42_RS06485	0.51	-0.4
1,419,682	+		RR42_RS06485	0.51	-1.0
1,419,682	+		RR42_RS06485	0.51	-0.2
1,420,301	+				+0.3
1,420,311	-				+0.3
1,420,340	+				+0.5
1,420,340	+				+0.3
1,420,340	+				+0.6
1,420,340	+				-0.9
1,420,340	+				-0.7
1,420,340	+				-0.9
1,420,341	-				-0.1
1,420,434	-		RR42_RS06490	0.17	+0.4
1,420,434	-		RR42_RS06490	0.17	+0.3
1,420,465	+		RR42_RS06490	0.19	+0.1
1,420,542	-		RR42_RS06490	0.26	+0.1
1,420,542	-		RR42_RS06490	0.26	-1.1
1,420,928	+		RR42_RS06490	0.57	+0.7
1,420,928	+		RR42_RS06490	0.57	+0.7
1,420,929	-		RR42_RS06490	0.57	-0.6
1,420,929	-		RR42_RS06490	0.57	-0.3
1,420,929	-		RR42_RS06490	0.57	+0.2
1,420,929	-		RR42_RS06490	0.57	-0.1
1,420,937	+		RR42_RS06490	0.58	-0.3
1,420,937	+		RR42_RS06490	0.58	-1.2
1,420,938	-		RR42_RS06490	0.58	+0.8
1,420,938	-		RR42_RS06490	0.58	+0.0
1,420,938	-		RR42_RS06490	0.58	+1.1
1,420,946	+		RR42_RS06490	0.58	+0.4
1,420,947	-		RR42_RS06490	0.59	+0.5
1,420,965	-		RR42_RS06490	0.60	+0.4
1,421,120	+		RR42_RS06490	0.73	-1.4
1,421,192	-		RR42_RS06490	0.78	+0.1