Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05345

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,182,148	+		RR42_RS05340	0.50	-0.4
1,182,148	+		RR42_RS05340	0.50	-0.6
1,182,148	+		RR42_RS05340	0.50	+0.5
1,182,148	+		RR42_RS05340	0.50	-0.4
1,182,149	-		RR42_RS05340	0.50	+0.3
1,182,149	-		RR42_RS05340	0.50	+0.0
1,182,277	+		RR42_RS05340	0.59	-0.2
1,182,278	-		RR42_RS05340	0.59	+0.1
1,182,520	+		RR42_RS05340	0.75	+0.3
1,182,815	-				-1.0
1,182,875	-				+1.1
1,182,933	+				+1.7
1,182,933	+				+0.1
1,182,972	+				-0.1
1,182,973	-				-0.4
1,183,056	+				+0.8
1,183,056	+				+0.3
1,183,056	+				-0.4
1,183,056	+				+0.9
1,183,057	-				+0.7
1,183,057	-				+0.6
1,183,061	+				+0.1
1,183,061	+				-0.2
1,183,061	+				+1.1
1,183,062	-				+0.9
1,183,148	+				-1.2
1,183,148	+				+0.1
1,183,149	-				-0.2
1,183,149	-				+0.7
1,183,149	-				+0.3
1,183,240	+		RR42_RS05345	0.13	+0.3
1,183,240	+		RR42_RS05345	0.13	-0.7
1,183,240	+		RR42_RS05345	0.13	+0.6
1,183,466	-		RR42_RS05345	0.37	-0.4
1,183,613	-		RR42_RS05345	0.52	-1.0
1,183,697	+		RR42_RS05345	0.61	-0.5
1,183,730	+		RR42_RS05345	0.64	+0.6
1,183,730	+		RR42_RS05345	0.64	-1.0
1,183,731	-		RR42_RS05345	0.65	-0.7
1,183,781	+		RR42_RS05345	0.70	-1.8
1,183,781	+		RR42_RS05345	0.70	+0.1
1,183,781	+		RR42_RS05345	0.70	-0.1
1,183,781	+		RR42_RS05345	0.70	+1.1
1,183,782	-		RR42_RS05345	0.70	-1.3
1,183,782	-		RR42_RS05345	0.70	+2.1
1,183,829	+		RR42_RS05345	0.75	-0.3
1,183,829	+		RR42_RS05345	0.75	+0.2
1,183,829	+		RR42_RS05345	0.75	-0.7
1,183,830	-		RR42_RS05345	0.75	+0.1
1,183,849	+		RR42_RS05345	0.77	+0.6
1,183,886	+		RR42_RS05345	0.81	-1.2
1,183,896	-		RR42_RS05345	0.82	-0.5
1,183,896	-		RR42_RS05345	0.82	+0.0
1,183,950	-		RR42_RS05345	0.88	+0.4
1,184,020	-				+0.1
1,184,113	-				-0.1
1,184,178	+				-0.1
1,184,178	+				-0.1
1,184,179	-				+0.7
1,184,179	-				-0.1
1,184,212	+		RR42_RS05350	0.10	+0.1
1,184,213	-		RR42_RS05350	0.10	-1.1
1,184,213	-		RR42_RS05350	0.10	+0.9
1,184,213	-		RR42_RS05350	0.10	+0.6
1,184,244	+		RR42_RS05350	0.14	+0.3
1,184,245	-				+2.7
1,184,245	-		RR42_RS05350	0.14	-1.2
1,184,245	-		RR42_RS05350	0.14	-0.4
1,184,290	-		RR42_RS05350	0.19	+0.0
1,184,290	-		RR42_RS05350	0.19	+0.4
1,184,290	-		RR42_RS05350	0.19	+0.1
1,184,358	+		RR42_RS05350	0.28	-0.1
1,184,358	+		RR42_RS05350	0.28	-0.2
1,184,358	+		RR42_RS05350	0.28	+0.4
1,184,359	-		RR42_RS05350	0.28	+0.5
1,184,359	-		RR42_RS05350	0.28	-0.7
1,184,380	+		RR42_RS05350	0.30	-0.2
1,184,380	+		RR42_RS05350	0.30	-0.2
1,184,380	+		RR42_RS05350	0.30	+1.5
1,184,380	+		RR42_RS05350	0.30	+0.3
1,184,381	-		RR42_RS05350	0.30	-1.0
1,184,381	-		RR42_RS05350	0.30	+0.4
1,184,381	-		RR42_RS05350	0.30	+0.1
1,184,381	-		RR42_RS05350	0.30	+0.6
1,184,381	-		RR42_RS05350	0.30	+0.9
1,184,381	-		RR42_RS05350	0.30	-0.1
1,184,381	-		RR42_RS05350	0.30	+2.5
1,184,443	-		RR42_RS05350	0.38	+1.1
1,184,637	+		RR42_RS05350	0.61	+0.0
1,184,637	+		RR42_RS05350	0.61	+1.5
1,184,637	+		RR42_RS05350	0.61	+0.7
1,184,637	+		RR42_RS05350	0.61	+0.1
1,184,637	+		RR42_RS05350	0.61	+1.3
1,184,637	+		RR42_RS05350	0.61	-0.0
1,184,638	-		RR42_RS05350	0.61	+0.5
1,184,638	-		RR42_RS05350	0.61	+1.6
1,184,638	-		RR42_RS05350	0.61	+0.5
1,184,638	-		RR42_RS05350	0.61	-1.4
1,184,638	-		RR42_RS05350	0.61	+0.4
1,184,638	-		RR42_RS05350	0.61	-1.4
1,184,956	+				+0.6
1,184,957	-				+0.3