Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04410

Experiment: R2A with Sisomicin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04405 and RR42_RS04410 are separated by 20 nucleotidesRR42_RS04410 and RR42_RS04415 are separated by 240 nucleotides RR42_RS04405: RR42_RS04405 - cyanophycin synthetase, at 979,764 to 982,334 _RS04405 RR42_RS04410: RR42_RS04410 - cyanophycin synthetase, at 982,355 to 984,991 _RS04410 RR42_RS04415: RR42_RS04415 - ABC transporter, at 985,232 to 987,520 _RS04415 Position (kb) 982 983 984 985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 981.483 kb on - strand, within RR42_RS04405at 981.485 kb on - strand, within RR42_RS04405at 981.530 kb on - strand, within RR42_RS04405at 981.838 kb on + strand, within RR42_RS04405at 982.024 kb on + strand, within RR42_RS04405at 982.024 kb on + strand, within RR42_RS04405at 982.032 kb on + strand, within RR42_RS04405at 982.032 kb on + strand, within RR42_RS04405at 982.042 kb on + strand, within RR42_RS04405at 982.042 kb on + strand, within RR42_RS04405at 982.042 kb on + strand, within RR42_RS04405at 982.043 kb on - strand, within RR42_RS04405at 982.457 kb on + strandat 982.457 kb on + strandat 982.458 kb on - strandat 982.458 kb on - strandat 982.458 kb on - strandat 982.533 kb on + strandat 982.534 kb on - strandat 982.534 kb on - strandat 982.945 kb on - strand, within RR42_RS04410at 983.025 kb on + strand, within RR42_RS04410at 983.026 kb on - strand, within RR42_RS04410at 983.026 kb on - strand, within RR42_RS04410at 983.205 kb on + strand, within RR42_RS04410at 983.205 kb on + strand, within RR42_RS04410at 983.206 kb on - strand, within RR42_RS04410at 983.206 kb on - strand, within RR42_RS04410at 983.206 kb on - strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.229 kb on + strand, within RR42_RS04410at 983.230 kb on - strand, within RR42_RS04410at 983.230 kb on - strand, within RR42_RS04410at 983.232 kb on + strand, within RR42_RS04410at 983.292 kb on + strand, within RR42_RS04410at 983.428 kb on - strand, within RR42_RS04410at 984.050 kb on + strand, within RR42_RS04410at 984.050 kb on + strand, within RR42_RS04410at 984.207 kb on + strand, within RR42_RS04410at 984.411 kb on + strand, within RR42_RS04410at 984.411 kb on + strand, within RR42_RS04410at 984.411 kb on + strand, within RR42_RS04410at 984.559 kb on - strand, within RR42_RS04410at 984.654 kb on + strand, within RR42_RS04410at 984.654 kb on + strand, within RR42_RS04410at 984.853 kb on - strandat 984.927 kb on + strandat 984.928 kb on - strandat 984.997 kb on + strandat 984.998 kb on - strandat 985.030 kb on - strandat 985.030 kb on - strandat 985.030 kb on - strandat 985.038 kb on - strandat 985.048 kb on + strandat 985.049 kb on - strandat 985.049 kb on - strandat 985.054 kb on + strandat 985.131 kb on + strandat 985.131 kb on + strandat 985.132 kb on - strandat 985.132 kb on - strandat 985.136 kb on - strandat 985.136 kb on - strandat 985.194 kb on - strandat 985.194 kb on - strandat 985.201 kb on + strandat 985.202 kb on - strandat 985.232 kb on - strandat 985.383 kb on + strandat 985.543 kb on + strand, within RR42_RS04415at 985.544 kb on - strand, within RR42_RS04415at 985.554 kb on - strand, within RR42_RS04415at 985.908 kb on - strand, within RR42_RS04415at 985.985 kb on + strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415at 985.986 kb on - strand, within RR42_RS04415

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
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981,483 - RR42_RS04405 0.67 -2.9
981,485 - RR42_RS04405 0.67 -2.3
981,530 - RR42_RS04405 0.69 -2.8
981,838 + RR42_RS04405 0.81 -2.7
982,024 + RR42_RS04405 0.88 -1.7
982,024 + RR42_RS04405 0.88 -2.2
982,032 + RR42_RS04405 0.88 -0.7
982,032 + RR42_RS04405 0.88 -3.4
982,042 + RR42_RS04405 0.89 -1.0
982,042 + RR42_RS04405 0.89 -2.1
982,042 + RR42_RS04405 0.89 +0.5
982,043 - RR42_RS04405 0.89 -2.0
982,457 + -1.9
982,457 + -1.2
982,458 - -2.5
982,458 - -1.0
982,458 - -0.6
982,533 + -2.0
982,534 - -3.1
982,534 - -0.8
982,945 - RR42_RS04410 0.22 -1.8
983,025 + RR42_RS04410 0.25 -1.2
983,026 - RR42_RS04410 0.25 -1.0
983,026 - RR42_RS04410 0.25 -3.4
983,205 + RR42_RS04410 0.32 -4.2
983,205 + RR42_RS04410 0.32 -2.4
983,206 - RR42_RS04410 0.32 -2.4
983,206 - RR42_RS04410 0.32 -2.2
983,206 - RR42_RS04410 0.32 -0.4
983,229 + RR42_RS04410 0.33 -2.0
983,229 + RR42_RS04410 0.33 -3.1
983,229 + RR42_RS04410 0.33 -3.3
983,229 + RR42_RS04410 0.33 +0.4
983,229 + RR42_RS04410 0.33 -1.6
983,229 + RR42_RS04410 0.33 -3.3
983,229 + RR42_RS04410 0.33 -1.7
983,230 - RR42_RS04410 0.33 -1.9
983,230 - RR42_RS04410 0.33 -3.1
983,232 + RR42_RS04410 0.33 +0.2
983,292 + RR42_RS04410 0.36 -2.6
983,428 - RR42_RS04410 0.41 -1.0
984,050 + RR42_RS04410 0.64 -1.7
984,050 + RR42_RS04410 0.64 -0.2
984,207 + RR42_RS04410 0.70 -3.4
984,411 + RR42_RS04410 0.78 -1.3
984,411 + RR42_RS04410 0.78 -1.3
984,411 + RR42_RS04410 0.78 -2.6
984,559 - RR42_RS04410 0.84 -3.9
984,654 + RR42_RS04410 0.87 -1.8
984,654 + RR42_RS04410 0.87 -3.9
984,853 - -1.3
984,927 + +0.6
984,928 - -2.5
984,997 + -0.8
984,998 - -1.5
985,030 - -0.3
985,030 - -0.1
985,030 - -1.3
985,038 - -2.0
985,048 + -1.7
985,049 - -0.4
985,049 - -1.3
985,054 + -0.4
985,131 + -1.7
985,131 + -0.9
985,132 - -0.4
985,132 - -3.0
985,136 - +0.0
985,136 - +0.6
985,194 - -2.0
985,194 - -1.9
985,201 + -3.0
985,202 - -2.0
985,232 - -2.3
985,383 + -3.0
985,543 + RR42_RS04415 0.14 -2.6
985,544 - RR42_RS04415 0.14 -3.5
985,554 - RR42_RS04415 0.14 -1.2
985,908 - RR42_RS04415 0.30 -1.2
985,985 + RR42_RS04415 0.33 -1.0
985,986 - RR42_RS04415 0.33 -1.9
985,986 - RR42_RS04415 0.33 -0.3
985,986 - RR42_RS04415 0.33 -1.0

Or see this region's nucleotide sequence