Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides RR42_RS03925 and RR42_RS03930 are separated by 119 nucleotides
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
RR42_RS03930: RR42_RS03930 - (2Fe-2S)-binding protein, at 866,349 to 867,365
_RS03930
Position (kb) 865
866
867 Strain fitness (log2 ratio) -2
-1
0
1 at 864.085 kb on - strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.165 kb on + strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.382 kb on - strand, within RR42_RS03915 at 864.390 kb on + strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.519 kb on + strand, within RR42_RS03915 at 864.786 kb on + strand at 864.787 kb on - strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.875 kb on + strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 865.204 kb on + strand, within RR42_RS03925 at 865.676 kb on + strand, within RR42_RS03925 at 865.939 kb on + strand, within RR42_RS03925 at 866.154 kb on + strand at 866.330 kb on + strand at 866.539 kb on - strand, within RR42_RS03930 at 866.587 kb on - strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930 at 866.778 kb on + strand, within RR42_RS03930
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 864,085 - RR42_RS03915 0.69 -0.5 864,085 - RR42_RS03915 0.69 -0.9 864,165 + RR42_RS03915 0.73 +0.2 864,373 - RR42_RS03915 0.82 -0.6 864,373 - RR42_RS03915 0.82 -0.6 864,382 - RR42_RS03915 0.82 +0.0 864,390 + RR42_RS03915 0.83 -0.4 864,391 - RR42_RS03915 0.83 -0.4 864,391 - RR42_RS03915 0.83 -0.6 864,519 + RR42_RS03915 0.88 +0.3 864,786 + +0.9 864,787 - +0.6 864,813 + +0.4 864,813 + -1.8 864,813 + -0.7 864,813 + -0.7 864,814 - -0.1 864,814 - +0.4 864,814 - +0.6 864,875 + RR42_RS03920 0.18 +0.2 864,876 - RR42_RS03920 0.18 +1.5 864,876 - RR42_RS03920 0.18 +1.3 865,204 + RR42_RS03925 0.12 -1.1 865,676 + RR42_RS03925 0.52 +0.5 865,939 + RR42_RS03925 0.75 -1.9 866,154 + +0.8 866,330 + +1.5 866,539 - RR42_RS03930 0.19 +0.1 866,587 - RR42_RS03930 0.23 +0.8 866,778 + RR42_RS03930 0.42 -1.1 866,778 + RR42_RS03930 0.42 +0.6
Or see this region's nucleotide sequence