Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03860 and RR42_RS03865 are separated by 93 nucleotides RR42_RS03865 and RR42_RS03870 are separated by 112 nucleotides RR42_RS03870 and RR42_RS03875 are separated by 166 nucleotides
RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919
_RS03860
RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954
_RS03865
RR42_RS03870: RR42_RS03870 - hypothetical protein, at 855,067 to 855,261
_RS03870
RR42_RS03875: RR42_RS03875 - nucleoside 2-deoxyribosyltransferase, at 855,428 to 855,976
_RS03875
Position (kb) 854
855 Strain fitness (log2 ratio) -1
0
1
2 at 853.068 kb on + strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.076 kb on + strand, within RR42_RS03860 at 853.203 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.774 kb on - strand, within RR42_RS03860 at 853.963 kb on + strand at 854.031 kb on - strand at 854.083 kb on - strand at 854.245 kb on - strand, within RR42_RS03865 at 854.245 kb on - strand, within RR42_RS03865 at 854.651 kb on - strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.837 kb on - strand, within RR42_RS03865 at 854.990 kb on + strand at 854.993 kb on - strand at 855.080 kb on - strand at 855.080 kb on - strand at 855.081 kb on + strand at 855.440 kb on + strand at 855.440 kb on + strand at 855.440 kb on + strand at 855.515 kb on + strand, within RR42_RS03875 at 855.516 kb on - strand, within RR42_RS03875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 853,068 + RR42_RS03860 0.21 -0.6 853,069 - RR42_RS03860 0.21 +0.5 853,069 - RR42_RS03860 0.21 -0.3 853,076 + RR42_RS03860 0.22 +0.1 853,203 + RR42_RS03860 0.34 -0.9 853,769 + RR42_RS03860 0.86 +0.9 853,769 + RR42_RS03860 0.86 +0.8 853,770 - RR42_RS03860 0.86 -0.2 853,770 - RR42_RS03860 0.86 +0.7 853,770 - RR42_RS03860 0.86 -1.1 853,774 - RR42_RS03860 0.86 -0.7 853,963 + +0.2 854,031 - +0.0 854,083 - -0.1 854,245 - RR42_RS03865 0.25 -0.6 854,245 - RR42_RS03865 0.25 +0.6 854,651 - RR42_RS03865 0.68 +0.7 854,836 + RR42_RS03865 0.87 +1.9 854,836 + RR42_RS03865 0.87 +1.0 854,837 - RR42_RS03865 0.87 +0.6 854,990 + -1.1 854,993 - -0.5 855,080 - -0.1 855,080 - -0.8 855,081 + +1.2 855,440 + +2.1 855,440 + -0.8 855,440 + +1.0 855,515 + RR42_RS03875 0.16 +0.3 855,516 - RR42_RS03875 0.16 -0.4
Or see this region's nucleotide sequence