Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03510 and RR42_RS03515 are separated by 63 nucleotides RR42_RS03515 and RR42_RS03520 are separated by 49 nucleotides
RR42_RS03510: RR42_RS03510 - ATPase AAA, at 779,190 to 781,910
_RS03510
RR42_RS03515: RR42_RS03515 - hypothetical protein, at 781,974 to 782,507
_RS03515
RR42_RS03520: RR42_RS03520 - type VI secretion protein EvpB, at 782,557 to 784,050
_RS03520
Position (kb) 781
782
783 Strain fitness (log2 ratio) -1
0
1 at 781.114 kb on - strand, within RR42_RS03510 at 781.203 kb on + strand, within RR42_RS03510 at 781.317 kb on + strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.318 kb on - strand, within RR42_RS03510 at 781.543 kb on - strand, within RR42_RS03510 at 781.842 kb on + strand at 781.843 kb on - strand at 781.843 kb on - strand at 781.973 kb on + strand at 781.973 kb on + strand at 781.974 kb on - strand at 782.030 kb on - strand, within RR42_RS03515 at 782.055 kb on + strand, within RR42_RS03515 at 782.235 kb on - strand, within RR42_RS03515 at 782.376 kb on + strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.377 kb on - strand, within RR42_RS03515 at 782.474 kb on + strand at 782.526 kb on + strand at 782.526 kb on + strand at 782.992 kb on + strand, within RR42_RS03520 at 783.005 kb on - strand, within RR42_RS03520 at 783.050 kb on - strand, within RR42_RS03520 at 783.052 kb on + strand, within RR42_RS03520 at 783.053 kb on - strand, within RR42_RS03520 at 783.266 kb on - strand, within RR42_RS03520 at 783.266 kb on - strand, within RR42_RS03520 at 783.266 kb on - strand, within RR42_RS03520 at 783.379 kb on + strand, within RR42_RS03520 at 783.379 kb on + strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.380 kb on - strand, within RR42_RS03520 at 783.439 kb on + strand, within RR42_RS03520 at 783.439 kb on + strand, within RR42_RS03520
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 781,114 - RR42_RS03510 0.71 -0.4 781,203 + RR42_RS03510 0.74 +0.4 781,317 + RR42_RS03510 0.78 +0.1 781,318 - RR42_RS03510 0.78 +0.2 781,318 - RR42_RS03510 0.78 +0.2 781,543 - RR42_RS03510 0.86 +0.1 781,842 + -0.2 781,843 - +1.2 781,843 - +0.5 781,973 + -0.6 781,973 + +1.2 781,974 - +0.2 782,030 - RR42_RS03515 0.10 -0.8 782,055 + RR42_RS03515 0.15 +1.1 782,235 - RR42_RS03515 0.49 -1.0 782,376 + RR42_RS03515 0.75 -1.0 782,377 - RR42_RS03515 0.75 -1.3 782,377 - RR42_RS03515 0.75 -0.0 782,377 - RR42_RS03515 0.75 -1.0 782,474 + +0.2 782,526 + +0.2 782,526 + -1.5 782,992 + RR42_RS03520 0.29 -0.2 783,005 - RR42_RS03520 0.30 -0.1 783,050 - RR42_RS03520 0.33 -0.1 783,052 + RR42_RS03520 0.33 +0.0 783,053 - RR42_RS03520 0.33 -0.2 783,266 - RR42_RS03520 0.47 -0.1 783,266 - RR42_RS03520 0.47 +0.5 783,266 - RR42_RS03520 0.47 +0.2 783,379 + RR42_RS03520 0.55 +0.6 783,379 + RR42_RS03520 0.55 +0.1 783,380 - RR42_RS03520 0.55 +0.8 783,380 - RR42_RS03520 0.55 -1.4 783,380 - RR42_RS03520 0.55 +0.8 783,439 + RR42_RS03520 0.59 -0.0 783,439 + RR42_RS03520 0.59 -1.0
Or see this region's nucleotide sequence