Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02740

Experiment: R2A with Sisomicin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02735 and RR42_RS02740 overlap by 20 nucleotidesRR42_RS02740 and RR42_RS02745 overlap by 4 nucleotides RR42_RS02735: RR42_RS02735 - hypothetical protein, at 609,230 to 610,477 _RS02735 RR42_RS02740: RR42_RS02740 - hypothetical protein, at 610,458 to 610,967 _RS02740 RR42_RS02745: RR42_RS02745 - Xaa-Pro aminopeptidase, at 610,964 to 612,346 _RS02745 Position (kb) 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 610.868 kb on - strand, within RR42_RS02740at 610.944 kb on + strandat 611.131 kb on - strand, within RR42_RS02745at 611.131 kb on - strand, within RR42_RS02745at 611.131 kb on - strand, within RR42_RS02745at 611.131 kb on - strand, within RR42_RS02745at 611.131 kb on - strand, within RR42_RS02745at 611.275 kb on - strand, within RR42_RS02745at 611.318 kb on - strand, within RR42_RS02745at 611.401 kb on - strand, within RR42_RS02745at 611.401 kb on - strand, within RR42_RS02745at 611.461 kb on - strand, within RR42_RS02745at 611.461 kb on - strand, within RR42_RS02745at 611.461 kb on - strand, within RR42_RS02745at 611.461 kb on - strand, within RR42_RS02745at 611.644 kb on - strand, within RR42_RS02745at 611.644 kb on - strand, within RR42_RS02745at 611.644 kb on - strand, within RR42_RS02745at 611.644 kb on - strand, within RR42_RS02745at 611.704 kb on - strand, within RR42_RS02745

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
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610,868 - RR42_RS02740 0.80 +0.1
610,944 + -2.1
611,131 - RR42_RS02745 0.12 +2.6
611,131 - RR42_RS02745 0.12 +1.0
611,131 - RR42_RS02745 0.12 +0.2
611,131 - RR42_RS02745 0.12 +1.3
611,131 - RR42_RS02745 0.12 +0.9
611,275 - RR42_RS02745 0.22 +0.6
611,318 - RR42_RS02745 0.26 +0.3
611,401 - RR42_RS02745 0.32 +0.1
611,401 - RR42_RS02745 0.32 +2.1
611,461 - RR42_RS02745 0.36 -0.1
611,461 - RR42_RS02745 0.36 +1.6
611,461 - RR42_RS02745 0.36 +1.0
611,461 - RR42_RS02745 0.36 +0.9
611,644 - RR42_RS02745 0.49 +1.3
611,644 - RR42_RS02745 0.49 +0.9
611,644 - RR42_RS02745 0.49 +0.6
611,644 - RR42_RS02745 0.49 +1.6
611,704 - RR42_RS02745 0.54 +1.3

Or see this region's nucleotide sequence