Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01040

Experiment: R2A with Sisomicin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01030 and RR42_RS01035 overlap by 2 nucleotidesRR42_RS01035 and RR42_RS01040 are separated by 282 nucleotidesRR42_RS01040 and RR42_RS01045 are separated by 101 nucleotidesRR42_RS01045 and RR42_RS01050 are separated by 147 nucleotides RR42_RS01030: RR42_RS01030 - molecular chaperone DnaK, at 244,320 to 244,739 _RS01030 RR42_RS01035: RR42_RS01035 - hypothetical protein, at 244,738 to 245,046 _RS01035 RR42_RS01040: RR42_RS01040 - cobalamin biosynthesis protein CobW, at 245,329 to 246,417 _RS01040 RR42_RS01045: RR42_RS01045 - Fur family transcriptional regulator, at 246,519 to 247,040 _RS01045 RR42_RS01050: RR42_RS01050 - alpha/beta hydrolase, at 247,188 to 248,087 _RS01050 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1 2at 245.187 kb on - strandat 245.187 kb on - strandat 245.212 kb on - strandat 245.212 kb on - strandat 245.212 kb on - strandat 245.216 kb on + strandat 245.216 kb on + strandat 245.216 kb on + strandat 245.217 kb on - strandat 245.217 kb on - strandat 245.240 kb on - strandat 245.240 kb on - strandat 245.270 kb on - strandat 245.270 kb on - strandat 245.496 kb on + strand, within RR42_RS01040at 245.496 kb on + strand, within RR42_RS01040at 245.496 kb on + strand, within RR42_RS01040at 245.497 kb on - strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.498 kb on + strand, within RR42_RS01040at 245.499 kb on - strand, within RR42_RS01040at 245.499 kb on - strand, within RR42_RS01040at 245.499 kb on - strand, within RR42_RS01040at 245.499 kb on - strand, within RR42_RS01040at 245.503 kb on + strand, within RR42_RS01040at 245.503 kb on + strand, within RR42_RS01040at 245.504 kb on - strand, within RR42_RS01040at 245.504 kb on - strand, within RR42_RS01040at 245.504 kb on - strand, within RR42_RS01040at 245.504 kb on - strand, within RR42_RS01040at 245.504 kb on - strand, within RR42_RS01040at 245.513 kb on + strand, within RR42_RS01040at 245.534 kb on + strand, within RR42_RS01040at 245.534 kb on + strand, within RR42_RS01040at 246.310 kb on + strandat 246.311 kb on - strandat 246.345 kb on + strandat 246.346 kb on - strandat 246.346 kb on - strandat 246.464 kb on + strandat 246.520 kb on + strandat 246.521 kb on - strandat 246.811 kb on + strand, within RR42_RS01045at 246.812 kb on - strand, within RR42_RS01045at 247.050 kb on + strandat 247.050 kb on + strandat 247.051 kb on - strandat 247.051 kb on - strandat 247.056 kb on + strandat 247.057 kb on - strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.148 kb on - strandat 247.148 kb on - strandat 247.188 kb on - strandat 247.188 kb on - strandat 247.244 kb on + strandat 247.245 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
remove
245,187 - +1.1
245,187 - +0.2
245,212 - +1.4
245,212 - -1.1
245,212 - +0.2
245,216 + -0.1
245,216 + +0.4
245,216 + -0.2
245,217 - +1.1
245,217 - +0.8
245,240 - +1.0
245,240 - +0.1
245,270 - +1.1
245,270 - +0.5
245,496 + RR42_RS01040 0.15 -1.5
245,496 + RR42_RS01040 0.15 +0.2
245,496 + RR42_RS01040 0.15 +0.3
245,497 - RR42_RS01040 0.15 -1.7
245,498 + RR42_RS01040 0.16 -0.5
245,498 + RR42_RS01040 0.16 -0.3
245,498 + RR42_RS01040 0.16 +0.2
245,498 + RR42_RS01040 0.16 -0.2
245,498 + RR42_RS01040 0.16 +1.7
245,498 + RR42_RS01040 0.16 +0.2
245,498 + RR42_RS01040 0.16 +0.6
245,498 + RR42_RS01040 0.16 -0.5
245,498 + RR42_RS01040 0.16 +2.1
245,498 + RR42_RS01040 0.16 -0.3
245,498 + RR42_RS01040 0.16 -0.9
245,498 + RR42_RS01040 0.16 +2.3
245,498 + RR42_RS01040 0.16 +0.8
245,498 + RR42_RS01040 0.16 -0.6
245,498 + RR42_RS01040 0.16 +0.6
245,499 - RR42_RS01040 0.16 -0.7
245,499 - RR42_RS01040 0.16 +1.8
245,499 - RR42_RS01040 0.16 -0.3
245,499 - RR42_RS01040 0.16 -0.7
245,503 + RR42_RS01040 0.16 +0.3
245,503 + RR42_RS01040 0.16 +0.1
245,504 - RR42_RS01040 0.16 +0.3
245,504 - RR42_RS01040 0.16 -0.7
245,504 - RR42_RS01040 0.16 +0.5
245,504 - RR42_RS01040 0.16 +1.6
245,504 - RR42_RS01040 0.16 +0.3
245,513 + RR42_RS01040 0.17 +0.3
245,534 + RR42_RS01040 0.19 +0.0
245,534 + RR42_RS01040 0.19 -1.0
246,310 + -1.2
246,311 - +1.5
246,345 + +0.3
246,346 - +0.3
246,346 - -0.3
246,464 + -1.5
246,520 + +0.3
246,521 - +0.8
246,811 + RR42_RS01045 0.56 +0.8
246,812 - RR42_RS01045 0.56 +0.8
247,050 + -1.0
247,050 + +0.5
247,051 - -0.5
247,051 - -0.1
247,056 + -0.1
247,057 - -0.2
247,147 + -0.8
247,147 + +1.7
247,147 + -0.2
247,147 + +1.7
247,148 - -0.8
247,148 - +0.7
247,188 - -0.2
247,188 - +0.1
247,244 + -1.0
247,245 - -0.7

Or see this region's nucleotide sequence