Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00525

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
137,076	+		RR42_RS00520	0.52	-1.4
137,092	+		RR42_RS00520	0.54	-1.0
137,134	+		RR42_RS00520	0.58	-0.2
137,134	+		RR42_RS00520	0.58	-1.3
137,135	-		RR42_RS00520	0.58	-0.4
137,135	-		RR42_RS00520	0.58	+1.1
137,135	-		RR42_RS00520	0.58	+0.1
137,233	+		RR42_RS00520	0.68	+1.2
137,233	+		RR42_RS00520	0.68	+1.1
137,233	+		RR42_RS00520	0.68	-0.9
137,248	+		RR42_RS00520	0.70	+0.4
137,248	+		RR42_RS00520	0.70	-0.6
137,248	+		RR42_RS00520	0.70	-0.2
137,248	+		RR42_RS00520	0.70	-0.2
137,327	-		RR42_RS00520	0.78	-0.3
137,327	-		RR42_RS00520	0.78	+0.1
137,327	-				-0.6
137,550	+				+0.5
137,623	+				+0.0
137,623	+				+0.5
137,624	-				-0.3
137,781	+				-0.8
137,782	-				+0.3
137,922	-				+0.0
137,930	+				-0.6
137,931	-				+0.8
137,931	-				+0.7
138,200	+		RR42_RS00525	0.61	-1.3
138,200	+		RR42_RS00525	0.61	-0.8
138,398	+				-0.5
138,446	+				+0.3
138,447	-				+0.2
138,447	-				-2.5
138,454	+				+0.2
138,454	+				-1.0
138,454	+				+0.0
138,455	-				+0.5
138,743	-		RR42_RS00530	0.28	-0.3
138,748	+		RR42_RS00530	0.29	+0.8
138,748	+		RR42_RS00530	0.29	-0.4
138,748	+		RR42_RS00530	0.29	-0.9
138,749	-		RR42_RS00530	0.29	-0.2
138,749	-		RR42_RS00530	0.29	+0.9
138,749	-		RR42_RS00530	0.29	-0.6
138,749	-		RR42_RS00530	0.29	+0.9
138,749	-		RR42_RS00530	0.29	-0.7
138,835	-		RR42_RS00530	0.42	-0.8
138,835	-		RR42_RS00530	0.42	-1.4
138,835	-		RR42_RS00530	0.42	+1.8
138,868	+		RR42_RS00530	0.46	+0.1
138,868	+		RR42_RS00530	0.46	+0.1
138,868	+		RR42_RS00530	0.46	+0.2
138,868	+		RR42_RS00530	0.46	-0.6
138,868	+		RR42_RS00530	0.46	-0.8
138,868	+		RR42_RS00530	0.46	-0.5
138,976	+		RR42_RS00530	0.62	+0.7
138,976	+		RR42_RS00530	0.62	-0.1
138,977	-		RR42_RS00530	0.62	-1.4
138,977	-		RR42_RS00530	0.62	+0.7
139,007	-		RR42_RS00530	0.66	+0.2
139,028	-		RR42_RS00530	0.69	+0.7
139,030	-		RR42_RS00530	0.70	-1.0
139,030	-		RR42_RS00530	0.70	+0.7
139,066	+		RR42_RS00530	0.75	+2.4
139,066	+		RR42_RS00530	0.75	-0.8
139,066	+		RR42_RS00530	0.75	+0.4
139,066	+		RR42_RS00530	0.75	+0.5
139,067	-		RR42_RS00530	0.75	+0.2
139,067	-		RR42_RS00530	0.75	-0.0
139,067	-		RR42_RS00530	0.75	+1.2
139,067	-		RR42_RS00530	0.75	-0.9
139,081	+		RR42_RS00530	0.77	+0.2
139,082	-		RR42_RS00530	0.77	+0.1
139,084	+		RR42_RS00530	0.77	-2.6
139,084	+		RR42_RS00530	0.77	-0.1
139,085	-		RR42_RS00530	0.78	-0.3
139,085	-		RR42_RS00530	0.78	+0.7
139,085	-		RR42_RS00530	0.78	-1.8
139,141	+		RR42_RS00530	0.86	-1.9
139,237	+				-0.4
139,237	+				+0.7
139,237	+				-0.1
139,237	+				+0.5
139,237	+				-0.5
139,237	+				-0.5
139,237	+				-0.3
139,238	-				+0.3
139,238	-				+0.5
139,238	-				-0.5
139,238	-				+0.0
139,238	-				-0.1
139,249	-				+1.0
139,318	+				+0.3
139,318	+				-0.7
139,318	+				-0.9
139,370	-				-0.3