Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4801 and Psyr_4802 are separated by 67 nucleotides Psyr_4802 and Psyr_4803 are separated by 24 nucleotides
Psyr_4801: Psyr_4801 - Outer membrane efflux protein, at 5,690,688 to 5,691,914
_4801
Psyr_4802: Psyr_4802 - Secretion protein HlyD, at 5,691,982 to 5,693,256
_4802
Psyr_4803: Psyr_4803 - Heavy metal efflux pump CzcA, at 5,693,281 to 5,696,445
_4803
Position (kb) 5691
5692
5693
5694 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5691.066 kb on + strand, within Psyr_4801 at 5691.067 kb on - strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.318 kb on + strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801 at 5691.319 kb on - strand, within Psyr_4801 at 5691.825 kb on + strand at 5691.826 kb on - strand at 5691.826 kb on - strand at 5691.877 kb on + strand at 5691.877 kb on + strand at 5691.878 kb on - strand at 5691.878 kb on - strand at 5692.576 kb on + strand, within Psyr_4802 at 5692.576 kb on + strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.273 kb on - strand at 5693.372 kb on - strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.415 kb on - strand at 5693.415 kb on - strand at 5693.896 kb on + strand, within Psyr_4803 at 5693.897 kb on - strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 5,691,066 + Psyr_4801 0.31 +0.5 5,691,067 - Psyr_4801 0.31 -1.3 5,691,318 + Psyr_4801 0.51 +0.6 5,691,318 + Psyr_4801 0.51 +0.7 5,691,318 + Psyr_4801 0.51 -2.3 5,691,319 - Psyr_4801 0.51 +2.1 5,691,319 - Psyr_4801 0.51 +0.4 5,691,825 + +1.1 5,691,826 - -0.3 5,691,826 - +0.4 5,691,877 + -0.7 5,691,877 + +0.1 5,691,878 - -0.2 5,691,878 - +0.0 5,692,576 + Psyr_4802 0.47 -0.7 5,692,576 + Psyr_4802 0.47 +1.3 5,692,577 - Psyr_4802 0.47 +1.3 5,692,577 - Psyr_4802 0.47 +1.6 5,692,577 - Psyr_4802 0.47 +0.2 5,692,577 - Psyr_4802 0.47 -0.7 5,693,272 + +0.1 5,693,272 + +0.1 5,693,272 + +0.7 5,693,273 - +0.7 5,693,372 - -0.3 5,693,414 + +0.7 5,693,414 + +0.3 5,693,414 + +0.1 5,693,414 + +0.4 5,693,414 + +0.3 5,693,414 + +0.3 5,693,415 - +0.2 5,693,415 - -0.3 5,693,896 + Psyr_4803 0.19 +0.2 5,693,897 - Psyr_4803 0.19 +1.1 5,693,962 + Psyr_4803 0.22 -0.6 5,693,962 + Psyr_4803 0.22 +0.2 5,693,962 + Psyr_4803 0.22 -0.3 5,693,962 + Psyr_4803 0.22 -1.7 5,693,963 - Psyr_4803 0.22 +0.2 5,693,963 - Psyr_4803 0.22 -0.5 5,693,963 - Psyr_4803 0.22 +0.8 5,693,963 - Psyr_4803 0.22 +0.4 5,693,963 - Psyr_4803 0.22 +0.7 5,693,965 - Psyr_4803 0.22 +1.2 5,693,965 - Psyr_4803 0.22 -0.2 5,693,966 + Psyr_4803 0.22 -0.3 5,693,966 + Psyr_4803 0.22 +0.1 5,693,966 + Psyr_4803 0.22 +0.4 5,693,966 + Psyr_4803 0.22 -0.3 5,693,966 + Psyr_4803 0.22 +0.1 5,693,966 + Psyr_4803 0.22 +0.5 5,693,966 + Psyr_4803 0.22 +1.1 5,693,966 + Psyr_4803 0.22 +0.1 5,693,966 + Psyr_4803 0.22 +0.2 5,693,966 + Psyr_4803 0.22 +0.3 5,693,966 + Psyr_4803 0.22 +0.1 5,693,966 + Psyr_4803 0.22 -0.5 5,693,966 + Psyr_4803 0.22 +0.7 5,693,966 + Psyr_4803 0.22 -0.8 5,693,966 + Psyr_4803 0.22 +2.1 5,693,967 - Psyr_4803 0.22 -0.7 5,693,967 - Psyr_4803 0.22 -0.5 5,693,967 - Psyr_4803 0.22 -2.7 5,693,967 - Psyr_4803 0.22 -0.3 5,693,967 - Psyr_4803 0.22 -0.3 5,693,967 - Psyr_4803 0.22 +1.1 5,693,967 - Psyr_4803 0.22 +0.5 5,693,967 - Psyr_4803 0.22 -0.0 5,693,967 - Psyr_4803 0.22 +0.0 5,693,967 - Psyr_4803 0.22 +2.1 5,693,967 - Psyr_4803 0.22 -1.5 5,693,967 - Psyr_4803 0.22 +0.2 5,693,967 - Psyr_4803 0.22 +1.7 5,693,967 - Psyr_4803 0.22 -0.7 5,693,987 + Psyr_4803 0.22 -1.6 5,693,987 + Psyr_4803 0.22 +0.6 5,694,252 - Psyr_4803 0.31 -0.0 5,694,252 - Psyr_4803 0.31 +0.8
Or see this region's nucleotide sequence