Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4666

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4665 and Psyr_4666 are separated by 10 nucleotidesPsyr_4666 and Psyr_4667 are separated by 152 nucleotides Psyr_4665: Psyr_4665 - membrane protein, putative, at 5,529,313 to 5,530,389 _4665 Psyr_4666: Psyr_4666 - transcriptional regulator, AsnC family, at 5,530,400 to 5,530,861 _4666 Psyr_4667: Psyr_4667 - Tryptophan 2-monooxygenase, at 5,531,014 to 5,532,693 _4667 Position (kb) 5530 5531Strain fitness (log2 ratio) -2 -1 0 1 2at 5529.447 kb on + strand, within Psyr_4665at 5529.448 kb on - strand, within Psyr_4665at 5529.448 kb on - strand, within Psyr_4665at 5529.568 kb on + strand, within Psyr_4665at 5529.608 kb on + strand, within Psyr_4665at 5529.609 kb on - strand, within Psyr_4665at 5529.646 kb on + strand, within Psyr_4665at 5529.646 kb on + strand, within Psyr_4665at 5529.647 kb on - strand, within Psyr_4665at 5529.647 kb on - strand, within Psyr_4665at 5529.647 kb on - strand, within Psyr_4665at 5529.682 kb on + strand, within Psyr_4665at 5529.757 kb on + strand, within Psyr_4665at 5529.757 kb on + strand, within Psyr_4665at 5529.758 kb on - strand, within Psyr_4665at 5529.758 kb on - strand, within Psyr_4665at 5529.758 kb on - strand, within Psyr_4665at 5529.847 kb on + strand, within Psyr_4665at 5529.847 kb on + strand, within Psyr_4665at 5529.847 kb on + strand, within Psyr_4665at 5529.848 kb on - strand, within Psyr_4665at 5529.848 kb on - strand, within Psyr_4665at 5529.869 kb on - strand, within Psyr_4665at 5529.907 kb on + strand, within Psyr_4665at 5530.104 kb on + strand, within Psyr_4665at 5530.387 kb on + strandat 5530.388 kb on - strandat 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.724 kb on + strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.770 kb on + strand, within Psyr_4666at 5530.873 kb on + strandat 5530.873 kb on + strandat 5530.873 kb on + strandat 5530.874 kb on - strandat 5530.874 kb on - strandat 5530.952 kb on + strandat 5530.952 kb on + strandat 5530.952 kb on + strandat 5530.955 kb on + strandat 5530.975 kb on - strandat 5531.161 kb on - strandat 5531.194 kb on + strand, within Psyr_4667at 5531.230 kb on + strand, within Psyr_4667at 5531.230 kb on + strand, within Psyr_4667at 5531.231 kb on - strand, within Psyr_4667at 5531.231 kb on - strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.443 kb on + strand, within Psyr_4667at 5531.444 kb on - strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.624 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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5,529,447 + Psyr_4665 0.12 -0.6
5,529,448 - Psyr_4665 0.13 +0.2
5,529,448 - Psyr_4665 0.13 -0.9
5,529,568 + Psyr_4665 0.24 -1.2
5,529,608 + Psyr_4665 0.27 +0.6
5,529,609 - Psyr_4665 0.27 +1.0
5,529,646 + Psyr_4665 0.31 +0.4
5,529,646 + Psyr_4665 0.31 -0.1
5,529,647 - Psyr_4665 0.31 +1.4
5,529,647 - Psyr_4665 0.31 -0.3
5,529,647 - Psyr_4665 0.31 -0.6
5,529,682 + Psyr_4665 0.34 +0.7
5,529,757 + Psyr_4665 0.41 -0.0
5,529,757 + Psyr_4665 0.41 -0.4
5,529,758 - Psyr_4665 0.41 +0.4
5,529,758 - Psyr_4665 0.41 +0.4
5,529,758 - Psyr_4665 0.41 +0.6
5,529,847 + Psyr_4665 0.50 -0.3
5,529,847 + Psyr_4665 0.50 -1.0
5,529,847 + Psyr_4665 0.50 +0.1
5,529,848 - Psyr_4665 0.50 +0.7
5,529,848 - Psyr_4665 0.50 +0.4
5,529,869 - Psyr_4665 0.52 +1.8
5,529,907 + Psyr_4665 0.55 +0.6
5,530,104 + Psyr_4665 0.73 +0.2
5,530,387 + -0.8
5,530,388 - +0.3
5,530,619 + Psyr_4666 0.47 +0.3
5,530,619 + Psyr_4666 0.47 +0.6
5,530,619 + Psyr_4666 0.47 +2.6
5,530,619 + Psyr_4666 0.47 -0.4
5,530,619 + Psyr_4666 0.47 -2.0
5,530,619 + Psyr_4666 0.47 +0.4
5,530,619 + Psyr_4666 0.47 +0.1
5,530,619 + Psyr_4666 0.47 -1.2
5,530,619 + Psyr_4666 0.47 +0.2
5,530,620 - Psyr_4666 0.48 +1.1
5,530,620 - Psyr_4666 0.48 -1.5
5,530,620 - Psyr_4666 0.48 -1.0
5,530,620 - Psyr_4666 0.48 -0.3
5,530,620 - Psyr_4666 0.48 +0.1
5,530,620 - Psyr_4666 0.48 -0.6
5,530,620 - Psyr_4666 0.48 -0.6
5,530,620 - Psyr_4666 0.48 -0.2
5,530,620 - Psyr_4666 0.48 +0.5
5,530,620 - Psyr_4666 0.48 +1.8
5,530,620 - Psyr_4666 0.48 +1.0
5,530,724 + Psyr_4666 0.70 -0.8
5,530,725 - Psyr_4666 0.70 -0.0
5,530,725 - Psyr_4666 0.70 -0.9
5,530,725 - Psyr_4666 0.70 -0.3
5,530,725 - Psyr_4666 0.70 -1.8
5,530,725 - Psyr_4666 0.70 -0.2
5,530,725 - Psyr_4666 0.70 +0.2
5,530,725 - Psyr_4666 0.70 -0.0
5,530,770 + Psyr_4666 0.80 -0.3
5,530,873 + +0.7
5,530,873 + -0.4
5,530,873 + -2.2
5,530,874 - -0.5
5,530,874 - -0.2
5,530,952 + -0.0
5,530,952 + +0.2
5,530,952 + +0.3
5,530,955 + -0.7
5,530,975 - +0.8
5,531,161 - -0.1
5,531,194 + Psyr_4667 0.11 -2.2
5,531,230 + Psyr_4667 0.13 -0.6
5,531,230 + Psyr_4667 0.13 -0.8
5,531,231 - Psyr_4667 0.13 -0.0
5,531,231 - Psyr_4667 0.13 -0.1
5,531,347 + Psyr_4667 0.20 +0.1
5,531,347 + Psyr_4667 0.20 -0.9
5,531,347 + Psyr_4667 0.20 -0.8
5,531,348 - Psyr_4667 0.20 +1.4
5,531,348 - Psyr_4667 0.20 +0.1
5,531,348 - Psyr_4667 0.20 +0.1
5,531,348 - Psyr_4667 0.20 +1.0
5,531,440 + Psyr_4667 0.25 +0.4
5,531,440 + Psyr_4667 0.25 -0.0
5,531,440 + Psyr_4667 0.25 +0.1
5,531,440 + Psyr_4667 0.25 +0.5
5,531,440 + Psyr_4667 0.25 -2.0
5,531,440 + Psyr_4667 0.25 +1.1
5,531,440 + Psyr_4667 0.25 +0.8
5,531,441 - Psyr_4667 0.25 +0.6
5,531,441 - Psyr_4667 0.25 -1.2
5,531,441 - Psyr_4667 0.25 +0.7
5,531,441 - Psyr_4667 0.25 +0.4
5,531,441 - Psyr_4667 0.25 -1.0
5,531,441 - Psyr_4667 0.25 +0.3
5,531,441 - Psyr_4667 0.25 +0.4
5,531,443 + Psyr_4667 0.26 -0.8
5,531,444 - Psyr_4667 0.26 -0.6
5,531,623 + Psyr_4667 0.36 +2.1
5,531,623 + Psyr_4667 0.36 -1.0
5,531,623 + Psyr_4667 0.36 -0.0
5,531,624 - Psyr_4667 0.36 -0.3
5,531,682 - Psyr_4667 0.40 +0.2
5,531,682 - Psyr_4667 0.40 +0.2
5,531,682 - Psyr_4667 0.40 -1.8

Or see this region's nucleotide sequence