Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3990 and Psyr_3991 are separated by 59 nucleotides Psyr_3991 and Psyr_3992 are separated by 25 nucleotides
Psyr_3990: Psyr_3990 - conserved hypothetical protein, at 4,748,908 to 4,749,918
_3990
Psyr_3991: Psyr_3991 - Protein of unknown function DUF477, at 4,749,978 to 4,750,595
_3991
Psyr_3992: Psyr_3992 - Protein of unknown function DUF477, at 4,750,621 to 4,751,334
_3992
Position (kb) 4749
4750
4751 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4748.985 kb on + strand at 4748.986 kb on - strand at 4749.003 kb on + strand at 4749.003 kb on + strand at 4749.003 kb on + strand at 4749.004 kb on - strand at 4749.004 kb on - strand at 4749.004 kb on - strand at 4749.113 kb on + strand, within Psyr_3990 at 4749.113 kb on + strand, within Psyr_3990 at 4749.113 kb on + strand, within Psyr_3990 at 4749.113 kb on + strand, within Psyr_3990 at 4749.113 kb on + strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.114 kb on - strand, within Psyr_3990 at 4749.303 kb on + strand, within Psyr_3990 at 4749.304 kb on - strand, within Psyr_3990 at 4749.315 kb on - strand, within Psyr_3990 at 4749.315 kb on - strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.350 kb on + strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.351 kb on - strand, within Psyr_3990 at 4749.447 kb on + strand, within Psyr_3990 at 4749.447 kb on + strand, within Psyr_3990 at 4749.448 kb on - strand, within Psyr_3990 at 4749.457 kb on + strand, within Psyr_3990 at 4749.457 kb on + strand, within Psyr_3990 at 4749.457 kb on + strand, within Psyr_3990 at 4749.466 kb on + strand, within Psyr_3990 at 4749.467 kb on - strand, within Psyr_3990 at 4749.501 kb on + strand, within Psyr_3990 at 4749.502 kb on - strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.613 kb on + strand, within Psyr_3990 at 4749.614 kb on - strand, within Psyr_3990 at 4749.614 kb on - strand, within Psyr_3990 at 4749.614 kb on - strand, within Psyr_3990 at 4749.655 kb on + strand, within Psyr_3990 at 4749.656 kb on - strand, within Psyr_3990 at 4749.658 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.880 kb on + strand at 4749.880 kb on + strand at 4749.880 kb on + strand at 4749.881 kb on - strand at 4749.881 kb on - strand at 4749.884 kb on + strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.895 kb on + strand at 4749.895 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.935 kb on - strand at 4749.935 kb on - strand at 4749.935 kb on - strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.067 kb on + strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.193 kb on - strand, within Psyr_3991 at 4750.193 kb on - strand, within Psyr_3991 at 4750.361 kb on + strand, within Psyr_3991 at 4750.362 kb on - strand, within Psyr_3991 at 4750.370 kb on + strand, within Psyr_3991 at 4750.370 kb on + strand, within Psyr_3991 at 4750.371 kb on - strand, within Psyr_3991 at 4750.371 kb on - strand, within Psyr_3991 at 4750.420 kb on + strand, within Psyr_3991 at 4750.420 kb on + strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.588 kb on - strand at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.799 kb on + strand, within Psyr_3992 at 4750.800 kb on - strand at 4750.883 kb on - strand, within Psyr_3992 at 4751.282 kb on - strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.408 kb on - strand at 4751.438 kb on - strand at 4751.487 kb on + strand at 4751.488 kb on - strand at 4751.488 kb on - strand at 4751.488 kb on - strand at 4751.509 kb on + strand at 4751.531 kb on - strand at 4751.546 kb on - strand at 4751.546 kb on - strand at 4751.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 4,748,985 + +0.7 4,748,986 - -0.2 4,749,003 + +0.4 4,749,003 + -0.0 4,749,003 + +0.4 4,749,004 - -0.2 4,749,004 - +0.8 4,749,004 - +0.3 4,749,113 + Psyr_3990 0.20 -0.6 4,749,113 + Psyr_3990 0.20 -1.5 4,749,113 + Psyr_3990 0.20 +1.2 4,749,113 + Psyr_3990 0.20 -0.2 4,749,113 + Psyr_3990 0.20 +0.6 4,749,114 - Psyr_3990 0.20 -1.2 4,749,114 - Psyr_3990 0.20 -2.0 4,749,114 - Psyr_3990 0.20 -0.9 4,749,114 - Psyr_3990 0.20 +0.5 4,749,114 - Psyr_3990 0.20 -0.2 4,749,114 - Psyr_3990 0.20 -0.5 4,749,114 - Psyr_3990 0.20 -0.9 4,749,303 + Psyr_3990 0.39 +0.3 4,749,304 - Psyr_3990 0.39 -1.0 4,749,315 - Psyr_3990 0.40 +0.6 4,749,315 - Psyr_3990 0.40 +0.8 4,749,350 + Psyr_3990 0.44 +0.4 4,749,350 + Psyr_3990 0.44 +1.8 4,749,350 + Psyr_3990 0.44 -2.5 4,749,350 + Psyr_3990 0.44 -1.6 4,749,350 + Psyr_3990 0.44 -0.4 4,749,350 + Psyr_3990 0.44 +1.6 4,749,350 + Psyr_3990 0.44 -0.8 4,749,350 + Psyr_3990 0.44 +0.4 4,749,350 + Psyr_3990 0.44 -1.2 4,749,350 + Psyr_3990 0.44 -0.8 4,749,350 + Psyr_3990 0.44 -0.9 4,749,351 - Psyr_3990 0.44 -0.6 4,749,351 - Psyr_3990 0.44 +0.1 4,749,351 - Psyr_3990 0.44 -0.2 4,749,351 - Psyr_3990 0.44 +2.6 4,749,351 - Psyr_3990 0.44 -1.5 4,749,351 - Psyr_3990 0.44 -0.2 4,749,351 - Psyr_3990 0.44 +0.1 4,749,351 - Psyr_3990 0.44 -2.3 4,749,351 - Psyr_3990 0.44 -0.5 4,749,351 - Psyr_3990 0.44 -0.7 4,749,351 - Psyr_3990 0.44 -1.1 4,749,447 + Psyr_3990 0.53 -0.4 4,749,447 + Psyr_3990 0.53 -0.1 4,749,448 - Psyr_3990 0.53 -0.3 4,749,457 + Psyr_3990 0.54 +0.5 4,749,457 + Psyr_3990 0.54 -0.4 4,749,457 + Psyr_3990 0.54 -1.2 4,749,466 + Psyr_3990 0.55 +0.5 4,749,467 - Psyr_3990 0.55 -1.7 4,749,501 + Psyr_3990 0.59 -0.3 4,749,502 - Psyr_3990 0.59 +0.1 4,749,613 + Psyr_3990 0.70 +1.0 4,749,613 + Psyr_3990 0.70 +0.2 4,749,613 + Psyr_3990 0.70 -0.5 4,749,613 + Psyr_3990 0.70 +0.0 4,749,613 + Psyr_3990 0.70 +0.6 4,749,613 + Psyr_3990 0.70 +2.1 4,749,613 + Psyr_3990 0.70 -0.4 4,749,614 - Psyr_3990 0.70 -0.5 4,749,614 - Psyr_3990 0.70 +0.5 4,749,614 - Psyr_3990 0.70 +0.3 4,749,655 + Psyr_3990 0.74 -0.9 4,749,656 - Psyr_3990 0.74 -0.7 4,749,658 - Psyr_3990 0.74 -0.0 4,749,803 - Psyr_3990 0.89 -0.7 4,749,803 - Psyr_3990 0.89 -1.0 4,749,803 - Psyr_3990 0.89 +1.1 4,749,803 - Psyr_3990 0.89 -0.0 4,749,803 - Psyr_3990 0.89 +0.1 4,749,880 + +1.8 4,749,880 + +0.4 4,749,880 + +0.1 4,749,881 - -0.6 4,749,881 - -1.2 4,749,884 + -0.8 4,749,885 - +0.2 4,749,885 - +0.7 4,749,885 - -0.4 4,749,885 - -0.8 4,749,885 - +2.8 4,749,885 - +1.1 4,749,885 - +0.2 4,749,895 + +0.5 4,749,895 + -0.5 4,749,934 + +0.8 4,749,934 + +0.2 4,749,934 + -0.8 4,749,934 + +0.7 4,749,935 - -0.8 4,749,935 - -1.8 4,749,935 - -1.7 4,749,936 + -0.2 4,749,936 + -0.5 4,749,936 + +0.4 4,749,936 + -0.0 4,749,936 + +1.5 4,749,936 + -1.5 4,749,937 - +0.0 4,749,937 - +0.0 4,749,937 - +0.8 4,749,937 - -0.7 4,750,032 + -0.1 4,750,032 + +0.3 4,750,032 + +0.7 4,750,032 + +0.7 4,750,032 + +0.8 4,750,032 + -1.8 4,750,032 + -0.3 4,750,032 + +0.2 4,750,032 + -0.2 4,750,032 + +0.2 4,750,033 - -0.4 4,750,033 - +0.4 4,750,033 - -0.8 4,750,033 - +1.4 4,750,067 + Psyr_3991 0.14 +0.9 4,750,068 - Psyr_3991 0.15 +0.0 4,750,068 - Psyr_3991 0.15 -0.2 4,750,068 - Psyr_3991 0.15 +0.1 4,750,192 + Psyr_3991 0.35 +1.3 4,750,192 + Psyr_3991 0.35 +0.3 4,750,192 + Psyr_3991 0.35 -0.7 4,750,193 - Psyr_3991 0.35 -0.5 4,750,193 - Psyr_3991 0.35 +0.3 4,750,361 + Psyr_3991 0.62 +2.6 4,750,362 - Psyr_3991 0.62 -0.2 4,750,370 + Psyr_3991 0.63 -0.3 4,750,370 + Psyr_3991 0.63 +0.8 4,750,371 - Psyr_3991 0.64 +0.5 4,750,371 - Psyr_3991 0.64 +0.8 4,750,420 + Psyr_3991 0.72 +0.6 4,750,420 + Psyr_3991 0.72 -0.4 4,750,421 - Psyr_3991 0.72 +0.8 4,750,421 - Psyr_3991 0.72 +0.5 4,750,421 - Psyr_3991 0.72 +0.8 4,750,421 - Psyr_3991 0.72 +2.0 4,750,421 - Psyr_3991 0.72 -0.8 4,750,421 - Psyr_3991 0.72 -0.1 4,750,477 + Psyr_3991 0.81 -2.3 4,750,477 + Psyr_3991 0.81 +0.7 4,750,477 + Psyr_3991 0.81 +0.4 4,750,477 + Psyr_3991 0.81 +0.0 4,750,477 + Psyr_3991 0.81 +1.5 4,750,477 + Psyr_3991 0.81 +1.4 4,750,477 + Psyr_3991 0.81 +0.4 4,750,477 + Psyr_3991 0.81 +0.8 4,750,477 + Psyr_3991 0.81 +2.6 4,750,477 + Psyr_3991 0.81 +0.8 4,750,478 - Psyr_3991 0.81 -0.7 4,750,478 - Psyr_3991 0.81 +2.8 4,750,478 - Psyr_3991 0.81 +1.5 4,750,478 - Psyr_3991 0.81 +0.3 4,750,478 - Psyr_3991 0.81 -1.1 4,750,478 - Psyr_3991 0.81 -1.0 4,750,478 - Psyr_3991 0.81 +1.0 4,750,483 + Psyr_3991 0.82 -0.2 4,750,483 + Psyr_3991 0.82 -0.1 4,750,483 + Psyr_3991 0.82 +1.0 4,750,483 + Psyr_3991 0.82 -0.4 4,750,484 - Psyr_3991 0.82 -0.1 4,750,484 - Psyr_3991 0.82 +0.8 4,750,484 - Psyr_3991 0.82 +1.1 4,750,588 - -1.0 4,750,726 + Psyr_3992 0.15 -0.7 4,750,726 + Psyr_3992 0.15 -1.5 4,750,726 + Psyr_3992 0.15 -0.8 4,750,726 + Psyr_3992 0.15 +0.2 4,750,727 - Psyr_3992 0.15 +0.2 4,750,727 - Psyr_3992 0.15 +0.7 4,750,727 - Psyr_3992 0.15 -1.4 4,750,727 - Psyr_3992 0.15 -2.2 4,750,727 - Psyr_3992 0.15 -0.2 4,750,727 - Psyr_3992 0.15 -0.6 4,750,727 - Psyr_3992 0.15 +0.5 4,750,727 - Psyr_3992 0.15 +0.7 4,750,799 + Psyr_3992 0.25 -0.2 4,750,800 - -0.8 4,750,883 - Psyr_3992 0.37 +0.1 4,751,282 - +1.4 4,751,306 + -1.0 4,751,306 + +0.6 4,751,306 + +1.0 4,751,306 + +0.5 4,751,307 - +0.1 4,751,307 - -0.4 4,751,307 - +1.0 4,751,307 - -0.9 4,751,307 - -0.6 4,751,307 - -2.1 4,751,307 - +0.0 4,751,307 - -0.8 4,751,408 - -1.6 4,751,438 - -0.7 4,751,487 + +0.8 4,751,488 - +0.1 4,751,488 - +0.5 4,751,488 - -0.2 4,751,509 + +0.8 4,751,531 - +1.3 4,751,546 - +0.8 4,751,546 - -0.9 4,751,546 - +3.4
Or see this region's nucleotide sequence