Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3768 and Psyr_3769 are separated by 281 nucleotides Psyr_3769 and Psyr_3770 are separated by 302 nucleotides Psyr_3770 and Psyr_3771 are separated by 93 nucleotides
Psyr_3768: Psyr_3768 - General substrate transporter:Major facilitator superfamily, at 4,485,561 to 4,486,877
_3768
Psyr_3769: Psyr_3769 - TonB-dependent siderophore receptor, at 4,487,159 to 4,489,333
_3769
Psyr_3770: Psyr_3770 - Propeptide, PepSY amd peptidase M4, at 4,489,636 to 4,489,944
_3770
Psyr_3771: Psyr_3771 - conserved hypothetical protein, at 4,490,038 to 4,491,201
_3771
Position (kb) 4487
4488
4489
4490 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4486.270 kb on - strand, within Psyr_3768 at 4486.292 kb on + strand, within Psyr_3768 at 4486.292 kb on + strand, within Psyr_3768 at 4486.293 kb on - strand, within Psyr_3768 at 4486.396 kb on - strand, within Psyr_3768 at 4486.540 kb on + strand, within Psyr_3768 at 4486.541 kb on - strand, within Psyr_3768 at 4486.541 kb on - strand, within Psyr_3768 at 4486.644 kb on + strand, within Psyr_3768 at 4486.828 kb on + strand at 4486.828 kb on + strand at 4486.829 kb on - strand at 4486.829 kb on - strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.863 kb on + strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.864 kb on - strand at 4486.933 kb on + strand at 4486.933 kb on + strand at 4486.958 kb on - strand at 4486.996 kb on + strand at 4486.997 kb on - strand at 4486.997 kb on - strand at 4487.147 kb on - strand at 4487.215 kb on - strand at 4487.215 kb on - strand at 4487.229 kb on + strand at 4487.229 kb on + strand at 4487.229 kb on + strand at 4487.230 kb on - strand at 4487.230 kb on - strand at 4487.250 kb on + strand at 4487.347 kb on - strand at 4487.382 kb on + strand, within Psyr_3769 at 4487.382 kb on + strand, within Psyr_3769 at 4487.383 kb on - strand, within Psyr_3769 at 4487.397 kb on + strand, within Psyr_3769 at 4487.397 kb on + strand, within Psyr_3769 at 4487.443 kb on - strand, within Psyr_3769 at 4487.499 kb on + strand, within Psyr_3769 at 4487.555 kb on + strand, within Psyr_3769 at 4487.556 kb on - strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.631 kb on + strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.632 kb on - strand, within Psyr_3769 at 4487.641 kb on + strand, within Psyr_3769 at 4487.642 kb on - strand, within Psyr_3769 at 4487.642 kb on - strand, within Psyr_3769 at 4487.664 kb on + strand, within Psyr_3769 at 4487.724 kb on + strand, within Psyr_3769 at 4487.724 kb on + strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.725 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.830 kb on - strand, within Psyr_3769 at 4487.838 kb on + strand, within Psyr_3769 at 4487.865 kb on + strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.866 kb on - strand, within Psyr_3769 at 4487.895 kb on + strand, within Psyr_3769 at 4487.895 kb on + strand, within Psyr_3769 at 4487.896 kb on - strand, within Psyr_3769 at 4487.896 kb on - strand, within Psyr_3769 at 4487.896 kb on - strand, within Psyr_3769 at 4487.896 kb on - strand, within Psyr_3769 at 4487.896 kb on - strand, within Psyr_3769 at 4488.053 kb on - strand, within Psyr_3769 at 4488.273 kb on + strand, within Psyr_3769 at 4488.273 kb on + strand, within Psyr_3769 at 4488.273 kb on + strand, within Psyr_3769 at 4488.273 kb on + strand, within Psyr_3769 at 4488.274 kb on - strand, within Psyr_3769 at 4488.274 kb on - strand, within Psyr_3769 at 4488.274 kb on - strand, within Psyr_3769 at 4488.274 kb on - strand, within Psyr_3769 at 4488.274 kb on - strand, within Psyr_3769 at 4488.366 kb on + strand, within Psyr_3769 at 4488.366 kb on + strand, within Psyr_3769 at 4488.367 kb on - strand, within Psyr_3769 at 4488.367 kb on - strand, within Psyr_3769 at 4488.367 kb on - strand, within Psyr_3769 at 4488.367 kb on - strand, within Psyr_3769 at 4488.367 kb on - strand, within Psyr_3769 at 4488.678 kb on + strand, within Psyr_3769 at 4488.679 kb on - strand, within Psyr_3769 at 4488.679 kb on - strand, within Psyr_3769 at 4488.679 kb on - strand, within Psyr_3769 at 4488.679 kb on - strand, within Psyr_3769 at 4488.679 kb on - strand, within Psyr_3769 at 4488.766 kb on - strand, within Psyr_3769 at 4488.831 kb on + strand, within Psyr_3769 at 4488.839 kb on + strand, within Psyr_3769 at 4488.840 kb on - strand, within Psyr_3769 at 4489.008 kb on + strand, within Psyr_3769 at 4489.011 kb on + strand, within Psyr_3769 at 4489.012 kb on - strand, within Psyr_3769 at 4489.012 kb on - strand, within Psyr_3769 at 4489.181 kb on - strand at 4489.182 kb on + strand at 4489.402 kb on + strand at 4489.402 kb on + strand at 4489.402 kb on + strand at 4489.402 kb on + strand at 4489.403 kb on - strand at 4489.403 kb on - strand at 4489.403 kb on - strand at 4489.403 kb on - strand at 4489.431 kb on + strand at 4489.431 kb on + strand at 4489.431 kb on + strand at 4489.450 kb on - strand at 4489.478 kb on - strand at 4489.478 kb on - strand at 4489.478 kb on - strand at 4489.526 kb on + strand at 4489.527 kb on - strand at 4489.527 kb on - strand at 4489.527 kb on - strand at 4489.530 kb on + strand at 4489.541 kb on + strand at 4489.542 kb on - strand at 4489.546 kb on - strand at 4489.732 kb on + strand, within Psyr_3770 at 4489.732 kb on + strand, within Psyr_3770 at 4489.733 kb on - strand, within Psyr_3770 at 4489.733 kb on - strand, within Psyr_3770 at 4489.849 kb on + strand, within Psyr_3770 at 4489.849 kb on + strand, within Psyr_3770 at 4489.849 kb on + strand, within Psyr_3770 at 4489.850 kb on - strand, within Psyr_3770 at 4489.891 kb on + strand, within Psyr_3770 at 4489.891 kb on + strand, within Psyr_3770 at 4489.891 kb on + strand, within Psyr_3770 at 4489.892 kb on - strand, within Psyr_3770 at 4489.892 kb on - strand, within Psyr_3770 at 4489.922 kb on + strand at 4489.922 kb on + strand at 4489.922 kb on + strand at 4489.923 kb on - strand at 4489.923 kb on - strand at 4489.923 kb on - strand at 4489.999 kb on + strand at 4490.000 kb on - strand at 4490.000 kb on - strand at 4490.000 kb on - strand at 4490.053 kb on + strand at 4490.093 kb on + strand at 4490.093 kb on + strand at 4490.093 kb on + strand at 4490.093 kb on + strand at 4490.094 kb on - strand at 4490.094 kb on - strand at 4490.100 kb on - strand at 4490.128 kb on + strand at 4490.129 kb on - strand at 4490.129 kb on - strand at 4490.129 kb on - strand at 4490.230 kb on + strand, within Psyr_3771 at 4490.230 kb on + strand, within Psyr_3771 at 4490.230 kb on + strand, within Psyr_3771 at 4490.230 kb on + strand, within Psyr_3771 at 4490.230 kb on + strand, within Psyr_3771 at 4490.231 kb on - strand, within Psyr_3771 at 4490.231 kb on - strand, within Psyr_3771 at 4490.231 kb on - strand, within Psyr_3771 at 4490.231 kb on - strand, within Psyr_3771 at 4490.231 kb on - strand, within Psyr_3771 at 4490.267 kb on + strand, within Psyr_3771 at 4490.267 kb on + strand, within Psyr_3771 at 4490.267 kb on + strand, within Psyr_3771 at 4490.267 kb on + strand, within Psyr_3771 at 4490.267 kb on + strand, within Psyr_3771 at 4490.268 kb on - strand, within Psyr_3771 at 4490.268 kb on - strand, within Psyr_3771 at 4490.268 kb on - strand, within Psyr_3771 at 4490.268 kb on - strand, within Psyr_3771 at 4490.268 kb on - strand, within Psyr_3771
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 4,486,270 - Psyr_3768 0.54 +2.2 4,486,292 + Psyr_3768 0.56 -2.1 4,486,292 + Psyr_3768 0.56 -0.8 4,486,293 - Psyr_3768 0.56 -1.9 4,486,396 - Psyr_3768 0.63 +0.8 4,486,540 + Psyr_3768 0.74 -1.2 4,486,541 - Psyr_3768 0.74 +0.3 4,486,541 - Psyr_3768 0.74 -1.1 4,486,644 + Psyr_3768 0.82 +0.9 4,486,828 + -0.3 4,486,828 + -0.4 4,486,829 - +1.5 4,486,829 - -1.0 4,486,863 + +0.7 4,486,863 + +1.0 4,486,863 + +1.2 4,486,863 + +1.5 4,486,863 + +0.1 4,486,863 + -0.6 4,486,864 - -2.1 4,486,864 - +0.4 4,486,864 - +0.3 4,486,864 - -2.3 4,486,933 + +1.3 4,486,933 + +0.0 4,486,958 - -1.3 4,486,996 + -1.3 4,486,997 - -0.7 4,486,997 - -0.3 4,487,147 - +0.3 4,487,215 - +0.5 4,487,215 - -1.7 4,487,229 + +0.1 4,487,229 + +2.2 4,487,229 + +0.0 4,487,230 - +0.4 4,487,230 - -1.6 4,487,250 + -1.4 4,487,347 - +0.4 4,487,382 + Psyr_3769 0.10 +2.3 4,487,382 + Psyr_3769 0.10 -0.5 4,487,383 - Psyr_3769 0.10 +0.7 4,487,397 + Psyr_3769 0.11 -1.0 4,487,397 + Psyr_3769 0.11 +0.7 4,487,443 - Psyr_3769 0.13 +0.7 4,487,499 + Psyr_3769 0.16 -1.8 4,487,555 + Psyr_3769 0.18 +0.2 4,487,556 - Psyr_3769 0.18 +0.3 4,487,631 + Psyr_3769 0.22 +0.7 4,487,631 + Psyr_3769 0.22 -0.7 4,487,631 + Psyr_3769 0.22 -0.7 4,487,631 + Psyr_3769 0.22 -2.3 4,487,631 + Psyr_3769 0.22 +1.2 4,487,631 + Psyr_3769 0.22 +0.7 4,487,631 + Psyr_3769 0.22 +0.0 4,487,631 + Psyr_3769 0.22 -0.3 4,487,631 + Psyr_3769 0.22 -1.8 4,487,632 - Psyr_3769 0.22 +0.7 4,487,632 - Psyr_3769 0.22 +0.1 4,487,632 - Psyr_3769 0.22 -2.7 4,487,632 - Psyr_3769 0.22 +1.0 4,487,632 - Psyr_3769 0.22 -2.2 4,487,632 - Psyr_3769 0.22 +0.4 4,487,632 - Psyr_3769 0.22 -0.8 4,487,641 + Psyr_3769 0.22 +0.2 4,487,642 - Psyr_3769 0.22 -1.4 4,487,642 - Psyr_3769 0.22 +1.7 4,487,664 + Psyr_3769 0.23 -0.1 4,487,724 + Psyr_3769 0.26 +1.1 4,487,724 + Psyr_3769 0.26 +0.3 4,487,725 - Psyr_3769 0.26 +1.9 4,487,725 - Psyr_3769 0.26 +0.7 4,487,725 - Psyr_3769 0.26 +1.3 4,487,830 - Psyr_3769 0.31 +0.5 4,487,830 - Psyr_3769 0.31 -0.3 4,487,830 - Psyr_3769 0.31 +1.7 4,487,838 + Psyr_3769 0.31 +0.7 4,487,865 + Psyr_3769 0.32 -0.8 4,487,866 - Psyr_3769 0.33 +0.7 4,487,866 - Psyr_3769 0.33 -1.4 4,487,866 - Psyr_3769 0.33 -0.8 4,487,866 - Psyr_3769 0.33 +2.0 4,487,895 + Psyr_3769 0.34 -0.4 4,487,895 + Psyr_3769 0.34 -0.3 4,487,896 - Psyr_3769 0.34 +1.3 4,487,896 - Psyr_3769 0.34 +0.3 4,487,896 - Psyr_3769 0.34 +0.6 4,487,896 - Psyr_3769 0.34 +0.5 4,487,896 - Psyr_3769 0.34 +0.7 4,488,053 - Psyr_3769 0.41 -0.7 4,488,273 + Psyr_3769 0.51 +0.3 4,488,273 + Psyr_3769 0.51 -1.3 4,488,273 + Psyr_3769 0.51 +0.6 4,488,273 + Psyr_3769 0.51 -1.4 4,488,274 - Psyr_3769 0.51 +0.6 4,488,274 - Psyr_3769 0.51 +1.3 4,488,274 - Psyr_3769 0.51 +0.4 4,488,274 - Psyr_3769 0.51 +0.2 4,488,274 - Psyr_3769 0.51 -1.3 4,488,366 + Psyr_3769 0.55 +0.7 4,488,366 + Psyr_3769 0.55 -0.8 4,488,367 - Psyr_3769 0.56 +0.5 4,488,367 - Psyr_3769 0.56 +1.6 4,488,367 - Psyr_3769 0.56 +0.2 4,488,367 - Psyr_3769 0.56 -0.3 4,488,367 - Psyr_3769 0.56 +0.7 4,488,678 + Psyr_3769 0.70 -0.3 4,488,679 - Psyr_3769 0.70 +1.1 4,488,679 - Psyr_3769 0.70 +0.5 4,488,679 - Psyr_3769 0.70 -0.3 4,488,679 - Psyr_3769 0.70 +0.2 4,488,679 - Psyr_3769 0.70 -0.6 4,488,766 - Psyr_3769 0.74 +0.7 4,488,831 + Psyr_3769 0.77 +1.6 4,488,839 + Psyr_3769 0.77 -0.1 4,488,840 - Psyr_3769 0.77 +0.6 4,489,008 + Psyr_3769 0.85 +0.0 4,489,011 + Psyr_3769 0.85 +1.0 4,489,012 - Psyr_3769 0.85 -1.7 4,489,012 - Psyr_3769 0.85 +0.6 4,489,181 - -0.3 4,489,182 + -0.4 4,489,402 + +0.3 4,489,402 + -0.2 4,489,402 + -0.1 4,489,402 + -0.3 4,489,403 - +0.7 4,489,403 - +3.1 4,489,403 - +1.3 4,489,403 - +1.3 4,489,431 + +0.6 4,489,431 + +1.1 4,489,431 + -0.4 4,489,450 - -0.2 4,489,478 - -0.6 4,489,478 - -0.8 4,489,478 - +0.2 4,489,526 + -0.8 4,489,527 - -0.2 4,489,527 - +1.7 4,489,527 - -1.1 4,489,530 + -0.4 4,489,541 + -0.0 4,489,542 - +0.5 4,489,546 - +0.4 4,489,732 + Psyr_3770 0.31 +1.6 4,489,732 + Psyr_3770 0.31 -0.2 4,489,733 - Psyr_3770 0.31 +0.2 4,489,733 - Psyr_3770 0.31 +1.2 4,489,849 + Psyr_3770 0.69 -0.2 4,489,849 + Psyr_3770 0.69 -0.6 4,489,849 + Psyr_3770 0.69 -0.6 4,489,850 - Psyr_3770 0.69 -0.8 4,489,891 + Psyr_3770 0.83 +1.1 4,489,891 + Psyr_3770 0.83 -0.4 4,489,891 + Psyr_3770 0.83 -0.5 4,489,892 - Psyr_3770 0.83 +0.1 4,489,892 - Psyr_3770 0.83 +0.2 4,489,922 + +0.7 4,489,922 + -1.1 4,489,922 + +0.4 4,489,923 - -1.8 4,489,923 - +0.4 4,489,923 - -0.4 4,489,999 + -0.8 4,490,000 - +0.6 4,490,000 - +0.7 4,490,000 - -0.6 4,490,053 + -1.3 4,490,093 + -0.5 4,490,093 + +1.0 4,490,093 + -0.3 4,490,093 + +0.2 4,490,094 - -0.6 4,490,094 - +1.2 4,490,100 - -0.8 4,490,128 + +1.2 4,490,129 - +0.6 4,490,129 - +3.2 4,490,129 - -0.1 4,490,230 + Psyr_3771 0.16 +0.0 4,490,230 + Psyr_3771 0.16 -0.4 4,490,230 + Psyr_3771 0.16 -0.3 4,490,230 + Psyr_3771 0.16 -0.5 4,490,230 + Psyr_3771 0.16 -1.0 4,490,231 - Psyr_3771 0.17 +1.0 4,490,231 - Psyr_3771 0.17 -0.0 4,490,231 - Psyr_3771 0.17 -1.7 4,490,231 - Psyr_3771 0.17 -0.3 4,490,231 - Psyr_3771 0.17 +0.7 4,490,267 + Psyr_3771 0.20 -0.5 4,490,267 + Psyr_3771 0.20 -0.7 4,490,267 + Psyr_3771 0.20 -2.1 4,490,267 + Psyr_3771 0.20 +1.7 4,490,267 + Psyr_3771 0.20 +0.4 4,490,268 - Psyr_3771 0.20 -0.4 4,490,268 - Psyr_3771 0.20 -0.4 4,490,268 - Psyr_3771 0.20 +1.8 4,490,268 - Psyr_3771 0.20 -0.1 4,490,268 - Psyr_3771 0.20 -1.3
Or see this region's nucleotide sequence