Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3633 and Psyr_3634 are separated by 479 nucleotides Psyr_3634 and Psyr_3635 are separated by 102 nucleotides Psyr_3635 and Psyr_3636 are separated by 159 nucleotides
Psyr_3633: Psyr_3633 - threonine/serine transporter, at 4,314,017 to 4,315,294
_3633
Psyr_3634: Psyr_3634 - transcriptional regulator, TetR family, at 4,315,774 to 4,316,343
_3634
Psyr_3635: Psyr_3635 - Competence protein ComEA helix-hairpin-helix region, at 4,316,446 to 4,316,808
_3635
Psyr_3636: Psyr_3636 - Polysaccharide biosynthesis protein CapD, at 4,316,968 to 4,318,962
_3636
Position (kb) 4315
4316
4317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4314.939 kb on + strand, within Psyr_3633 at 4314.939 kb on + strand, within Psyr_3633 at 4314.939 kb on + strand, within Psyr_3633 at 4314.940 kb on - strand, within Psyr_3633 at 4314.940 kb on - strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.972 kb on + strand, within Psyr_3633 at 4314.973 kb on - strand at 4314.973 kb on - strand, within Psyr_3633 at 4315.223 kb on - strand at 4315.223 kb on - strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.254 kb on - strand at 4315.268 kb on + strand at 4315.280 kb on - strand at 4315.421 kb on - strand at 4315.683 kb on - strand at 4315.683 kb on - strand at 4315.724 kb on + strand at 4315.724 kb on + strand at 4315.724 kb on + strand at 4315.725 kb on - strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.732 kb on + strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.735 kb on - strand at 4315.735 kb on - strand at 4315.735 kb on - strand at 4315.794 kb on + strand at 4315.916 kb on - strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.980 kb on - strand, within Psyr_3634 at 4315.980 kb on - strand, within Psyr_3634 at 4315.980 kb on - strand, within Psyr_3634 at 4316.041 kb on + strand, within Psyr_3634 at 4316.041 kb on + strand, within Psyr_3634 at 4316.042 kb on - strand, within Psyr_3634 at 4316.042 kb on - strand, within Psyr_3634 at 4316.045 kb on + strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.142 kb on + strand, within Psyr_3634 at 4316.142 kb on + strand, within Psyr_3634 at 4316.234 kb on + strand, within Psyr_3634 at 4316.234 kb on + strand, within Psyr_3634 at 4316.235 kb on - strand, within Psyr_3634 at 4316.324 kb on + strand at 4316.324 kb on + strand at 4316.358 kb on + strand at 4316.358 kb on + strand at 4316.358 kb on + strand at 4316.358 kb on + strand at 4316.359 kb on - strand at 4316.359 kb on - strand at 4316.390 kb on - strand at 4316.391 kb on + strand at 4316.392 kb on - strand at 4316.504 kb on - strand, within Psyr_3635 at 4316.504 kb on - strand, within Psyr_3635 at 4316.808 kb on + strand at 4316.808 kb on + strand at 4316.808 kb on + strand at 4316.808 kb on + strand at 4316.808 kb on + strand at 4316.808 kb on + strand at 4316.809 kb on - strand at 4316.809 kb on - strand at 4316.812 kb on + strand at 4316.812 kb on + strand at 4316.812 kb on + strand at 4316.812 kb on + strand at 4316.813 kb on - strand at 4316.813 kb on - strand at 4316.813 kb on - strand at 4316.813 kb on - strand at 4316.813 kb on - strand at 4316.822 kb on + strand at 4316.864 kb on - strand at 4316.927 kb on + strand at 4316.927 kb on + strand at 4316.927 kb on + strand at 4316.928 kb on - strand at 4316.928 kb on - strand at 4316.994 kb on - strand at 4316.994 kb on - strand at 4317.024 kb on + strand at 4317.024 kb on + strand at 4317.024 kb on + strand at 4317.024 kb on + strand at 4317.025 kb on - strand at 4317.025 kb on - strand at 4317.025 kb on - strand at 4317.068 kb on + strand at 4317.069 kb on - strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.118 kb on + strand at 4317.119 kb on - strand at 4317.119 kb on - strand at 4317.119 kb on - strand at 4317.119 kb on - strand at 4317.119 kb on - strand at 4317.206 kb on + strand, within Psyr_3636 at 4317.207 kb on - strand, within Psyr_3636
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 4,314,939 + Psyr_3633 0.72 +2.3 4,314,939 + Psyr_3633 0.72 -0.1 4,314,939 + Psyr_3633 0.72 +0.6 4,314,940 - Psyr_3633 0.72 +0.1 4,314,940 - Psyr_3633 0.72 +0.3 4,314,972 + Psyr_3633 0.75 +0.3 4,314,972 + Psyr_3633 0.75 -0.3 4,314,972 + Psyr_3633 0.75 -0.9 4,314,972 + Psyr_3633 0.75 +0.0 4,314,972 + Psyr_3633 0.75 +1.4 4,314,972 + Psyr_3633 0.75 +0.8 4,314,972 + Psyr_3633 0.75 -0.2 4,314,973 - -2.3 4,314,973 - Psyr_3633 0.75 -0.3 4,315,223 - -0.8 4,315,223 - +0.4 4,315,253 + -0.5 4,315,253 + -0.6 4,315,253 + +1.1 4,315,253 + -0.9 4,315,253 + -0.0 4,315,253 + -1.6 4,315,253 + +0.3 4,315,254 - -2.5 4,315,268 + +0.2 4,315,280 - +0.9 4,315,421 - -0.3 4,315,683 - +0.2 4,315,683 - -0.8 4,315,724 + -1.4 4,315,724 + +0.7 4,315,724 + -0.6 4,315,725 - -1.0 4,315,732 + +3.3 4,315,732 + +0.9 4,315,732 + -0.3 4,315,732 + -1.9 4,315,732 + +2.3 4,315,732 + +2.7 4,315,732 + +0.7 4,315,732 + -1.5 4,315,733 - +0.6 4,315,733 - -0.7 4,315,733 - -0.5 4,315,733 - -0.0 4,315,733 - -1.9 4,315,733 - -0.7 4,315,733 - -0.1 4,315,733 - -1.0 4,315,733 - +0.6 4,315,734 + -0.9 4,315,734 + +0.2 4,315,734 + -0.1 4,315,734 + -0.3 4,315,735 - +0.1 4,315,735 - +2.1 4,315,735 - -0.6 4,315,794 + +0.4 4,315,916 - Psyr_3634 0.25 +0.3 4,315,979 + Psyr_3634 0.36 -1.3 4,315,979 + Psyr_3634 0.36 -0.9 4,315,979 + Psyr_3634 0.36 +1.1 4,315,979 + Psyr_3634 0.36 -0.6 4,315,979 + Psyr_3634 0.36 -0.3 4,315,980 - Psyr_3634 0.36 +0.3 4,315,980 - Psyr_3634 0.36 +1.2 4,315,980 - Psyr_3634 0.36 -2.8 4,316,041 + Psyr_3634 0.47 +0.5 4,316,041 + Psyr_3634 0.47 +0.9 4,316,042 - Psyr_3634 0.47 +1.0 4,316,042 - Psyr_3634 0.47 -1.1 4,316,045 + Psyr_3634 0.48 +0.6 4,316,094 + Psyr_3634 0.56 +0.2 4,316,094 + Psyr_3634 0.56 +0.4 4,316,094 + Psyr_3634 0.56 +1.0 4,316,094 + Psyr_3634 0.56 +1.9 4,316,095 - Psyr_3634 0.56 -0.3 4,316,095 - Psyr_3634 0.56 +1.7 4,316,095 - Psyr_3634 0.56 -0.6 4,316,095 - Psyr_3634 0.56 +0.9 4,316,095 - Psyr_3634 0.56 +0.2 4,316,142 + Psyr_3634 0.65 -2.5 4,316,142 + Psyr_3634 0.65 -1.9 4,316,234 + Psyr_3634 0.81 +0.4 4,316,234 + Psyr_3634 0.81 -0.4 4,316,235 - Psyr_3634 0.81 +0.2 4,316,324 + -1.9 4,316,324 + +1.3 4,316,358 + -1.1 4,316,358 + -1.6 4,316,358 + +0.2 4,316,358 + +0.5 4,316,359 - +0.7 4,316,359 - +0.1 4,316,390 - +0.3 4,316,391 + +0.7 4,316,392 - +1.0 4,316,504 - Psyr_3635 0.16 +0.7 4,316,504 - Psyr_3635 0.16 +2.0 4,316,808 + -1.4 4,316,808 + -0.6 4,316,808 + -2.3 4,316,808 + +0.4 4,316,808 + -1.3 4,316,808 + -0.1 4,316,809 - +0.8 4,316,809 - +0.2 4,316,812 + +0.7 4,316,812 + -1.7 4,316,812 + -1.2 4,316,812 + -2.3 4,316,813 - +0.9 4,316,813 - -0.3 4,316,813 - -0.7 4,316,813 - +0.4 4,316,813 - -0.6 4,316,822 + +0.7 4,316,864 - +0.3 4,316,927 + -0.3 4,316,927 + -0.5 4,316,927 + +0.3 4,316,928 - -1.3 4,316,928 - -0.0 4,316,994 - +1.0 4,316,994 - +1.9 4,317,024 + -2.6 4,317,024 + +1.5 4,317,024 + -0.9 4,317,024 + -0.9 4,317,025 - +1.8 4,317,025 - -0.0 4,317,025 - +1.2 4,317,068 + +0.7 4,317,069 - +2.6 4,317,118 + -2.9 4,317,118 + -1.0 4,317,118 + +0.2 4,317,118 + -1.3 4,317,118 + -1.3 4,317,118 + +0.4 4,317,118 + +2.7 4,317,118 + +0.2 4,317,118 + +0.7 4,317,118 + +0.1 4,317,119 - +0.5 4,317,119 - -0.4 4,317,119 - +0.0 4,317,119 - -0.0 4,317,119 - -1.3 4,317,206 + Psyr_3636 0.12 -0.9 4,317,207 - Psyr_3636 0.12 -0.3
Or see this region's nucleotide sequence