Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2956

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2954 and Psyr_2955 are separated by 33 nucleotidesPsyr_2955 and Psyr_2956 are separated by 71 nucleotidesPsyr_2956 and Psyr_2957 are separated by 28 nucleotides Psyr_2954: Psyr_2954 - Phospholipase/Carboxylesterase, at 3,542,307 to 3,542,978 _2954 Psyr_2955: Psyr_2955 - Surfeit locus 4-related protein, at 3,543,012 to 3,543,413 _2955 Psyr_2956: Psyr_2956 - Zinc-containing alcohol dehydrogenase superfamily, at 3,543,485 to 3,544,594 _2956 Psyr_2957: Psyr_2957 - Glutathione-dependent formaldehyde-activating, GFA, at 3,544,623 to 3,545,243 _2957 Position (kb) 3543 3544 3545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3542.596 kb on + strand, within Psyr_2954at 3542.597 kb on - strand, within Psyr_2954at 3542.597 kb on - strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.821 kb on + strand, within Psyr_2954at 3542.991 kb on - strandat 3542.994 kb on + strandat 3542.994 kb on + strandat 3542.995 kb on - strandat 3543.100 kb on + strand, within Psyr_2955at 3543.101 kb on - strand, within Psyr_2955at 3543.110 kb on + strand, within Psyr_2955at 3543.122 kb on + strand, within Psyr_2955at 3543.122 kb on + strand, within Psyr_2955at 3543.212 kb on - strand, within Psyr_2955at 3543.336 kb on + strand, within Psyr_2955at 3543.337 kb on - strand, within Psyr_2955at 3543.337 kb on - strand, within Psyr_2955at 3543.600 kb on + strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.601 kb on - strand, within Psyr_2956at 3543.660 kb on + strand, within Psyr_2956at 3543.697 kb on - strand, within Psyr_2956at 3543.778 kb on + strand, within Psyr_2956at 3543.779 kb on - strand, within Psyr_2956at 3543.863 kb on + strand, within Psyr_2956at 3543.864 kb on - strand, within Psyr_2956at 3543.881 kb on + strand, within Psyr_2956at 3543.882 kb on - strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.914 kb on + strand, within Psyr_2956at 3543.915 kb on - strand, within Psyr_2956at 3544.435 kb on - strand, within Psyr_2956at 3544.435 kb on - strand, within Psyr_2956at 3544.589 kb on + strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.647 kb on + strandat 3544.648 kb on - strandat 3544.649 kb on + strandat 3544.650 kb on - strandat 3544.659 kb on + strandat 3544.659 kb on + strandat 3544.659 kb on + strandat 3544.660 kb on - strandat 3544.932 kb on - strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3545.163 kb on + strand, within Psyr_2957at 3545.164 kb on - strand, within Psyr_2957at 3545.164 kb on - strand, within Psyr_2957at 3545.209 kb on + strandat 3545.246 kb on + strandat 3545.247 kb on - strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.318 kb on - strandat 3545.318 kb on - strandat 3545.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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3,542,596 + Psyr_2954 0.43 -0.0
3,542,597 - Psyr_2954 0.43 -2.2
3,542,597 - Psyr_2954 0.43 -0.7
3,542,821 + Psyr_2954 0.76 -1.2
3,542,821 + Psyr_2954 0.76 -0.6
3,542,821 + Psyr_2954 0.76 -0.4
3,542,991 - +2.2
3,542,994 + +1.0
3,542,994 + +0.8
3,542,995 - +0.6
3,543,100 + Psyr_2955 0.22 -0.2
3,543,101 - Psyr_2955 0.22 -2.2
3,543,110 + Psyr_2955 0.24 -0.0
3,543,122 + Psyr_2955 0.27 -1.2
3,543,122 + Psyr_2955 0.27 +2.2
3,543,212 - Psyr_2955 0.50 -0.4
3,543,336 + Psyr_2955 0.81 +0.6
3,543,337 - Psyr_2955 0.81 +0.9
3,543,337 - Psyr_2955 0.81 +0.0
3,543,600 + Psyr_2956 0.10 -0.3
3,543,601 - Psyr_2956 0.10 +0.9
3,543,601 - Psyr_2956 0.10 +0.3
3,543,601 - Psyr_2956 0.10 -0.7
3,543,601 - Psyr_2956 0.10 -0.1
3,543,660 + Psyr_2956 0.16 +0.6
3,543,697 - Psyr_2956 0.19 -1.2
3,543,778 + Psyr_2956 0.26 +0.6
3,543,779 - Psyr_2956 0.26 +0.3
3,543,863 + Psyr_2956 0.34 -2.0
3,543,864 - Psyr_2956 0.34 -0.0
3,543,881 + Psyr_2956 0.36 -1.5
3,543,882 - Psyr_2956 0.36 -0.4
3,543,887 + Psyr_2956 0.36 -0.5
3,543,887 + Psyr_2956 0.36 -2.9
3,543,887 + Psyr_2956 0.36 +0.3
3,543,887 + Psyr_2956 0.36 +0.3
3,543,888 - Psyr_2956 0.36 -0.4
3,543,888 - Psyr_2956 0.36 +0.3
3,543,914 + Psyr_2956 0.39 -0.7
3,543,915 - Psyr_2956 0.39 -1.7
3,544,435 - Psyr_2956 0.86 -0.1
3,544,435 - Psyr_2956 0.86 -0.1
3,544,589 + +1.0
3,544,590 - +0.4
3,544,590 - +0.6
3,544,590 - +1.7
3,544,590 - +0.2
3,544,590 - -0.3
3,544,590 - -0.8
3,544,590 - +1.9
3,544,647 + +0.1
3,544,648 - +0.6
3,544,649 + -0.2
3,544,650 - +0.2
3,544,659 + +1.4
3,544,659 + -1.7
3,544,659 + +0.6
3,544,660 - +0.6
3,544,932 - Psyr_2957 0.50 +0.6
3,544,970 + Psyr_2957 0.56 -2.0
3,544,970 + Psyr_2957 0.56 -0.6
3,544,970 + Psyr_2957 0.56 +0.3
3,544,970 + Psyr_2957 0.56 -0.7
3,544,970 + Psyr_2957 0.56 +0.2
3,544,971 - Psyr_2957 0.56 -1.7
3,544,971 - Psyr_2957 0.56 -0.8
3,544,971 - Psyr_2957 0.56 +1.2
3,544,974 + Psyr_2957 0.57 -0.4
3,544,974 + Psyr_2957 0.57 +0.1
3,544,974 + Psyr_2957 0.57 -0.7
3,544,974 + Psyr_2957 0.57 -0.2
3,544,974 + Psyr_2957 0.57 -0.3
3,544,974 + Psyr_2957 0.57 -1.7
3,544,974 + Psyr_2957 0.57 -0.0
3,544,974 + Psyr_2957 0.57 -1.7
3,544,974 + Psyr_2957 0.57 -0.4
3,544,975 - Psyr_2957 0.57 -0.4
3,544,975 - Psyr_2957 0.57 -0.9
3,544,975 - Psyr_2957 0.57 -0.2
3,544,975 - Psyr_2957 0.57 +0.1
3,544,975 - Psyr_2957 0.57 -0.3
3,544,975 - Psyr_2957 0.57 -0.4
3,544,975 - Psyr_2957 0.57 +0.4
3,544,975 - Psyr_2957 0.57 +1.0
3,544,975 - Psyr_2957 0.57 -0.2
3,544,975 - Psyr_2957 0.57 -1.1
3,544,975 - Psyr_2957 0.57 -0.9
3,544,975 - Psyr_2957 0.57 +0.2
3,545,163 + Psyr_2957 0.87 -0.7
3,545,164 - Psyr_2957 0.87 +0.6
3,545,164 - Psyr_2957 0.87 +1.3
3,545,209 + -0.2
3,545,246 + +1.0
3,545,247 - +1.1
3,545,317 + +0.2
3,545,317 + +1.6
3,545,317 + -0.7
3,545,317 + +0.6
3,545,317 + +0.7
3,545,317 + -0.6
3,545,317 + +0.6
3,545,317 + -0.3
3,545,318 - -0.2
3,545,318 - +1.6
3,545,318 - -0.6

Or see this region's nucleotide sequence