Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2677

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2676 and Psyr_2677 overlap by 4 nucleotidesPsyr_2677 and Psyr_2678 overlap by 4 nucleotides Psyr_2676: Psyr_2676 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 3,247,353 to 3,248,369 _2676 Psyr_2677: Psyr_2677 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 3,248,366 to 3,249,499 _2677 Psyr_2678: Psyr_2678 - extracellular solute-binding protein, family 5, at 3,249,496 to 3,250,998 _2678 Position (kb) 3248 3249 3250Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3247.420 kb on + strandat 3247.871 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.064 kb on + strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.065 kb on - strand, within Psyr_2676at 3248.127 kb on + strand, within Psyr_2676at 3248.127 kb on + strand, within Psyr_2676at 3248.128 kb on - strand, within Psyr_2676at 3248.128 kb on - strand, within Psyr_2676at 3248.560 kb on - strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.689 kb on - strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.782 kb on - strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.829 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677at 3249.438 kb on - strandat 3249.438 kb on - strandat 3249.438 kb on - strandat 3249.625 kb on + strandat 3249.626 kb on - strandat 3249.643 kb on + strandat 3249.644 kb on - strandat 3249.691 kb on + strand, within Psyr_2678at 3249.736 kb on - strand, within Psyr_2678at 3249.772 kb on + strand, within Psyr_2678at 3249.773 kb on - strand, within Psyr_2678at 3249.773 kb on - strand, within Psyr_2678at 3250.031 kb on - strand, within Psyr_2678at 3250.031 kb on - strand, within Psyr_2678at 3250.087 kb on + strand, within Psyr_2678at 3250.088 kb on - strand, within Psyr_2678at 3250.088 kb on - strandat 3250.088 kb on - strand, within Psyr_2678at 3250.088 kb on - strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.271 kb on - strand, within Psyr_2678at 3250.381 kb on - strand, within Psyr_2678at 3250.405 kb on + strand, within Psyr_2678at 3250.447 kb on + strand, within Psyr_2678at 3250.448 kb on - strand, within Psyr_2678

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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3,247,420 + +1.1
3,247,871 + Psyr_2676 0.51 +1.1
3,248,064 + Psyr_2676 0.70 -0.2
3,248,064 + Psyr_2676 0.70 -0.4
3,248,064 + Psyr_2676 0.70 -2.8
3,248,064 + Psyr_2676 0.70 -1.0
3,248,064 + Psyr_2676 0.70 -3.1
3,248,065 - Psyr_2676 0.70 -1.1
3,248,065 - Psyr_2676 0.70 -1.1
3,248,065 - Psyr_2676 0.70 -0.8
3,248,127 + Psyr_2676 0.76 +0.4
3,248,127 + Psyr_2676 0.76 -2.0
3,248,128 - Psyr_2676 0.76 -1.8
3,248,128 - Psyr_2676 0.76 -0.5
3,248,560 - Psyr_2677 0.17 -1.0
3,248,639 + Psyr_2677 0.24 -0.2
3,248,639 + Psyr_2677 0.24 +3.7
3,248,640 - Psyr_2677 0.24 +1.2
3,248,640 - Psyr_2677 0.24 +0.9
3,248,640 - Psyr_2677 0.24 +0.6
3,248,640 - Psyr_2677 0.24 +0.6
3,248,689 - Psyr_2677 0.28 +1.8
3,248,781 + Psyr_2677 0.37 +0.1
3,248,781 + Psyr_2677 0.37 +0.3
3,248,782 - Psyr_2677 0.37 +0.5
3,248,785 + Psyr_2677 0.37 +0.2
3,248,785 + Psyr_2677 0.37 -0.0
3,248,785 + Psyr_2677 0.37 +0.6
3,248,785 + Psyr_2677 0.37 +0.4
3,248,786 - Psyr_2677 0.37 -1.4
3,248,786 - Psyr_2677 0.37 +1.2
3,248,786 - Psyr_2677 0.37 -0.4
3,248,786 - Psyr_2677 0.37 +0.7
3,248,829 + Psyr_2677 0.41 -0.7
3,248,841 + Psyr_2677 0.42 -2.0
3,248,841 + Psyr_2677 0.42 +1.2
3,249,104 + Psyr_2677 0.65 +0.8
3,249,104 + Psyr_2677 0.65 +1.4
3,249,104 + Psyr_2677 0.65 -0.7
3,249,104 + Psyr_2677 0.65 +1.1
3,249,105 - Psyr_2677 0.65 +0.2
3,249,105 - Psyr_2677 0.65 -1.3
3,249,105 - Psyr_2677 0.65 +0.1
3,249,105 - Psyr_2677 0.65 -0.4
3,249,105 - Psyr_2677 0.65 +1.2
3,249,170 - Psyr_2677 0.71 -0.0
3,249,170 - Psyr_2677 0.71 +0.3
3,249,438 - +1.4
3,249,438 - -0.3
3,249,438 - +0.9
3,249,625 + +0.2
3,249,626 - -0.0
3,249,643 + -0.0
3,249,644 - +1.1
3,249,691 + Psyr_2678 0.13 -0.1
3,249,736 - Psyr_2678 0.16 -0.1
3,249,772 + Psyr_2678 0.18 +1.6
3,249,773 - Psyr_2678 0.18 +0.2
3,249,773 - Psyr_2678 0.18 +0.8
3,250,031 - Psyr_2678 0.36 +1.0
3,250,031 - Psyr_2678 0.36 +0.1
3,250,087 + Psyr_2678 0.39 -0.6
3,250,088 - Psyr_2678 0.39 -0.0
3,250,088 - -1.8
3,250,088 - Psyr_2678 0.39 -0.7
3,250,088 - Psyr_2678 0.39 +0.4
3,250,249 + Psyr_2678 0.50 -0.5
3,250,249 + Psyr_2678 0.50 -0.3
3,250,249 + Psyr_2678 0.50 -0.3
3,250,249 + Psyr_2678 0.50 -2.6
3,250,249 + Psyr_2678 0.50 +1.9
3,250,249 + Psyr_2678 0.50 -0.4
3,250,250 - Psyr_2678 0.50 +0.8
3,250,250 - Psyr_2678 0.50 -0.0
3,250,250 - Psyr_2678 0.50 -0.8
3,250,250 - Psyr_2678 0.50 +1.1
3,250,271 - Psyr_2678 0.52 -1.2
3,250,381 - Psyr_2678 0.59 +0.4
3,250,405 + Psyr_2678 0.60 -1.0
3,250,447 + Psyr_2678 0.63 -0.6
3,250,448 - Psyr_2678 0.63 -0.2

Or see this region's nucleotide sequence