Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2325

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2324 and Psyr_2325 are separated by 219 nucleotidesPsyr_2325 and Psyr_2326 are separated by 17 nucleotidesPsyr_2326 and Psyr_2327 are separated by 39 nucleotides Psyr_2324: Psyr_2324 - conserved hypothetical protein, at 2,702,401 to 2,702,787 _2324 Psyr_2325: Psyr_2325 - conserved hypothetical protein, at 2,703,007 to 2,703,525 _2325 Psyr_2326: Psyr_2326 - lipoprotein, putative, at 2,703,543 to 2,704,076 _2326 Psyr_2327: Psyr_2327 - GTP cyclohydrolase subunit MoaA, at 2,704,116 to 2,705,114 _2327 Position (kb) 2703 2704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2702.009 kb on + strandat 2702.032 kb on + strandat 2702.037 kb on - strandat 2702.092 kb on + strandat 2702.092 kb on + strandat 2702.093 kb on - strandat 2702.093 kb on - strandat 2702.093 kb on - strandat 2702.093 kb on - strandat 2702.264 kb on - strandat 2702.264 kb on - strandat 2702.320 kb on + strandat 2702.358 kb on + strandat 2702.445 kb on + strand, within Psyr_2324at 2702.445 kb on + strand, within Psyr_2324at 2702.445 kb on + strand, within Psyr_2324at 2702.446 kb on - strand, within Psyr_2324at 2702.453 kb on - strand, within Psyr_2324at 2702.490 kb on + strand, within Psyr_2324at 2702.491 kb on - strand, within Psyr_2324at 2702.692 kb on + strand, within Psyr_2324at 2702.725 kb on + strand, within Psyr_2324at 2702.725 kb on + strand, within Psyr_2324at 2702.725 kb on + strand, within Psyr_2324at 2702.726 kb on - strand, within Psyr_2324at 2702.726 kb on - strand, within Psyr_2324at 2702.726 kb on - strand, within Psyr_2324at 2702.726 kb on - strand, within Psyr_2324at 2702.726 kb on - strand, within Psyr_2324at 2702.736 kb on + strand, within Psyr_2324at 2702.737 kb on - strand, within Psyr_2324at 2702.898 kb on + strandat 2702.898 kb on + strandat 2702.898 kb on + strandat 2702.899 kb on - strandat 2702.919 kb on + strandat 2702.919 kb on + strandat 2702.919 kb on + strandat 2702.920 kb on - strandat 2702.920 kb on - strandat 2702.920 kb on - strandat 2702.920 kb on - strandat 2702.920 kb on - strandat 2702.920 kb on - strandat 2702.992 kb on - strandat 2702.993 kb on + strandat 2703.026 kb on + strandat 2703.114 kb on + strand, within Psyr_2325at 2703.114 kb on + strand, within Psyr_2325at 2703.115 kb on - strand, within Psyr_2325at 2703.136 kb on + strand, within Psyr_2325at 2703.138 kb on + strand, within Psyr_2325at 2703.205 kb on + strand, within Psyr_2325at 2703.205 kb on + strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.206 kb on - strand, within Psyr_2325at 2703.264 kb on + strand, within Psyr_2325at 2703.265 kb on - strand, within Psyr_2325at 2703.265 kb on - strand, within Psyr_2325at 2703.367 kb on + strand, within Psyr_2325at 2703.368 kb on - strand, within Psyr_2325at 2703.368 kb on - strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.394 kb on + strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.395 kb on - strand, within Psyr_2325at 2703.583 kb on + strandat 2703.583 kb on + strandat 2703.584 kb on - strandat 2703.584 kb on - strandat 2703.584 kb on - strandat 2703.654 kb on + strand, within Psyr_2326at 2703.654 kb on + strand, within Psyr_2326at 2703.655 kb on - strand, within Psyr_2326at 2703.655 kb on - strand, within Psyr_2326at 2703.722 kb on + strand, within Psyr_2326at 2703.722 kb on + strand, within Psyr_2326at 2703.723 kb on - strand, within Psyr_2326at 2703.879 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.915 kb on + strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.916 kb on - strand, within Psyr_2326at 2703.975 kb on + strand, within Psyr_2326at 2703.975 kb on + strand, within Psyr_2326at 2703.976 kb on - strand, within Psyr_2326at 2704.074 kb on + strandat 2704.075 kb on - strandat 2704.075 kb on - strandat 2704.088 kb on + strandat 2704.130 kb on + strandat 2704.130 kb on + strandat 2704.130 kb on + strandat 2704.349 kb on + strand, within Psyr_2327at 2704.350 kb on - strand, within Psyr_2327at 2704.492 kb on + strand, within Psyr_2327at 2704.492 kb on + strand, within Psyr_2327

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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2,702,009 + +0.9
2,702,032 + +2.1
2,702,037 - +0.7
2,702,092 + -1.6
2,702,092 + +0.2
2,702,093 - -0.3
2,702,093 - -0.4
2,702,093 - -0.1
2,702,093 - +1.6
2,702,264 - +0.3
2,702,264 - +1.7
2,702,320 + -0.3
2,702,358 + +1.9
2,702,445 + Psyr_2324 0.11 -1.3
2,702,445 + Psyr_2324 0.11 -2.4
2,702,445 + Psyr_2324 0.11 +0.0
2,702,446 - Psyr_2324 0.12 -1.1
2,702,453 - Psyr_2324 0.13 +0.4
2,702,490 + Psyr_2324 0.23 +0.2
2,702,491 - Psyr_2324 0.23 +0.1
2,702,692 + Psyr_2324 0.75 +1.1
2,702,725 + Psyr_2324 0.84 +0.7
2,702,725 + Psyr_2324 0.84 +0.6
2,702,725 + Psyr_2324 0.84 +1.6
2,702,726 - Psyr_2324 0.84 -1.0
2,702,726 - Psyr_2324 0.84 -0.2
2,702,726 - Psyr_2324 0.84 -0.4
2,702,726 - Psyr_2324 0.84 +0.3
2,702,726 - Psyr_2324 0.84 -0.5
2,702,736 + Psyr_2324 0.87 -0.8
2,702,737 - Psyr_2324 0.87 -0.0
2,702,898 + -1.0
2,702,898 + +0.1
2,702,898 + +0.8
2,702,899 - +0.6
2,702,919 + -0.0
2,702,919 + -0.1
2,702,919 + -0.4
2,702,920 - +0.1
2,702,920 - +0.6
2,702,920 - -1.7
2,702,920 - -1.8
2,702,920 - +0.9
2,702,920 - +0.3
2,702,992 - -0.4
2,702,993 + +1.0
2,703,026 + -1.0
2,703,114 + Psyr_2325 0.21 +0.1
2,703,114 + Psyr_2325 0.21 +0.1
2,703,115 - Psyr_2325 0.21 -0.3
2,703,136 + Psyr_2325 0.25 -0.0
2,703,138 + Psyr_2325 0.25 -0.3
2,703,205 + Psyr_2325 0.38 -0.9
2,703,205 + Psyr_2325 0.38 +0.1
2,703,206 - Psyr_2325 0.38 -0.4
2,703,206 - Psyr_2325 0.38 -0.3
2,703,206 - Psyr_2325 0.38 -1.0
2,703,206 - Psyr_2325 0.38 +1.0
2,703,206 - Psyr_2325 0.38 -0.1
2,703,264 + Psyr_2325 0.50 +0.1
2,703,265 - Psyr_2325 0.50 +0.6
2,703,265 - Psyr_2325 0.50 -1.3
2,703,367 + Psyr_2325 0.69 -0.3
2,703,368 - Psyr_2325 0.70 -0.8
2,703,368 - Psyr_2325 0.70 -1.2
2,703,394 + Psyr_2325 0.75 +2.0
2,703,394 + Psyr_2325 0.75 -0.4
2,703,394 + Psyr_2325 0.75 -0.3
2,703,395 - Psyr_2325 0.75 +0.2
2,703,395 - Psyr_2325 0.75 -0.4
2,703,395 - Psyr_2325 0.75 -2.0
2,703,395 - Psyr_2325 0.75 -0.1
2,703,395 - Psyr_2325 0.75 -0.3
2,703,395 - Psyr_2325 0.75 -0.2
2,703,395 - Psyr_2325 0.75 -0.4
2,703,395 - Psyr_2325 0.75 -1.4
2,703,395 - Psyr_2325 0.75 -1.0
2,703,583 + +1.3
2,703,583 + +0.4
2,703,584 - -1.0
2,703,584 - -0.2
2,703,584 - +1.6
2,703,654 + Psyr_2326 0.21 -0.4
2,703,654 + Psyr_2326 0.21 +0.1
2,703,655 - Psyr_2326 0.21 -0.9
2,703,655 - Psyr_2326 0.21 -1.8
2,703,722 + Psyr_2326 0.34 -0.9
2,703,722 + Psyr_2326 0.34 +3.5
2,703,723 - Psyr_2326 0.34 -1.4
2,703,879 + Psyr_2326 0.63 -0.0
2,703,915 + Psyr_2326 0.70 +1.1
2,703,915 + Psyr_2326 0.70 -1.1
2,703,915 + Psyr_2326 0.70 -1.3
2,703,915 + Psyr_2326 0.70 -0.0
2,703,915 + Psyr_2326 0.70 +0.4
2,703,915 + Psyr_2326 0.70 -2.0
2,703,915 + Psyr_2326 0.70 -1.8
2,703,915 + Psyr_2326 0.70 +1.3
2,703,915 + Psyr_2326 0.70 -1.6
2,703,915 + Psyr_2326 0.70 -0.3
2,703,915 + Psyr_2326 0.70 +1.4
2,703,916 - Psyr_2326 0.70 -0.2
2,703,916 - Psyr_2326 0.70 +0.2
2,703,916 - Psyr_2326 0.70 -1.4
2,703,916 - Psyr_2326 0.70 -0.8
2,703,916 - Psyr_2326 0.70 -2.0
2,703,916 - Psyr_2326 0.70 -0.8
2,703,916 - Psyr_2326 0.70 -1.4
2,703,916 - Psyr_2326 0.70 -1.4
2,703,916 - Psyr_2326 0.70 -0.2
2,703,916 - Psyr_2326 0.70 -1.4
2,703,975 + Psyr_2326 0.81 -0.4
2,703,975 + Psyr_2326 0.81 +0.9
2,703,976 - Psyr_2326 0.81 +0.3
2,704,074 + +0.2
2,704,075 - -0.2
2,704,075 - +0.0
2,704,088 + +1.3
2,704,130 + -0.0
2,704,130 + -0.4
2,704,130 + -2.6
2,704,349 + Psyr_2327 0.23 -3.3
2,704,350 - Psyr_2327 0.23 +1.1
2,704,492 + Psyr_2327 0.38 +0.6
2,704,492 + Psyr_2327 0.38 -1.8

Or see this region's nucleotide sequence