Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1376 and Psyr_1377 are separated by 396 nucleotides Psyr_1377 and Psyr_1378 are separated by 93 nucleotides
Psyr_1376: Psyr_1376 - DNA mismatch repair protein MutS, at 1,558,832 to 1,561,411
_1376
Psyr_1377: Psyr_1377 - CinA, C-terminal, at 1,561,808 to 1,562,386
_1377
Psyr_1378: Psyr_1378 - RecA protein, at 1,562,480 to 1,563,544
_1378
Position (kb) 1561
1562
1563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1561.173 kb on + strand at 1561.173 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.288 kb on - strand at 1561.288 kb on - strand at 1561.500 kb on + strand at 1561.521 kb on + strand at 1561.547 kb on + strand at 1561.614 kb on + strand at 1561.614 kb on + strand at 1561.614 kb on + strand at 1561.615 kb on - strand at 1561.615 kb on - strand at 1561.654 kb on + strand at 1561.657 kb on - strand at 1561.670 kb on + strand at 1561.670 kb on + strand at 1561.671 kb on - strand at 1561.671 kb on - strand at 1561.672 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.857 kb on - strand at 1561.881 kb on - strand, within Psyr_1377 at 1561.881 kb on - strand, within Psyr_1377 at 1561.881 kb on - strand, within Psyr_1377 at 1562.036 kb on + strand, within Psyr_1377 at 1562.037 kb on - strand, within Psyr_1377 at 1562.073 kb on + strand, within Psyr_1377 at 1562.074 kb on - strand, within Psyr_1377 at 1562.088 kb on + strand, within Psyr_1377 at 1562.089 kb on - strand, within Psyr_1377 at 1562.089 kb on - strand, within Psyr_1377 at 1562.349 kb on + strand at 1562.350 kb on - strand at 1562.412 kb on + strand at 1562.452 kb on - strand at 1562.465 kb on + strand at 1562.465 kb on + strand at 1562.465 kb on + strand at 1562.466 kb on - strand at 1562.466 kb on - strand at 1563.128 kb on + strand, within Psyr_1378 at 1563.129 kb on - strand, within Psyr_1378 at 1563.281 kb on + strand, within Psyr_1378 at 1563.281 kb on + strand, within Psyr_1378 at 1563.282 kb on - strand, within Psyr_1378 at 1563.282 kb on - strand, within Psyr_1378 at 1563.353 kb on + strand, within Psyr_1378
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 1,561,173 + -0.8 1,561,173 + +0.6 1,561,250 + -0.5 1,561,250 + -0.3 1,561,250 + +0.9 1,561,250 + +1.3 1,561,250 + +1.1 1,561,250 + -1.2 1,561,288 - +0.0 1,561,288 - +0.4 1,561,500 + +1.0 1,561,521 + -0.5 1,561,547 + +0.5 1,561,614 + +0.0 1,561,614 + -0.4 1,561,614 + -0.9 1,561,615 - +1.5 1,561,615 - -1.7 1,561,654 + +1.6 1,561,657 - +0.2 1,561,670 + +0.0 1,561,670 + +1.4 1,561,671 - -1.2 1,561,671 - +0.0 1,561,672 + +0.5 1,561,799 + +1.3 1,561,799 + +0.2 1,561,799 + +1.4 1,561,799 + +0.0 1,561,799 + +0.1 1,561,799 + +1.4 1,561,799 + -0.4 1,561,800 - -1.2 1,561,800 - +0.6 1,561,800 - -2.0 1,561,800 - -1.5 1,561,800 - -0.2 1,561,800 - +0.3 1,561,800 - +0.8 1,561,800 - +0.8 1,561,800 - -1.3 1,561,800 - -0.7 1,561,857 - -0.8 1,561,881 - Psyr_1377 0.13 +2.2 1,561,881 - Psyr_1377 0.13 -1.0 1,561,881 - Psyr_1377 0.13 +1.7 1,562,036 + Psyr_1377 0.39 +0.8 1,562,037 - Psyr_1377 0.40 -0.3 1,562,073 + Psyr_1377 0.46 +2.1 1,562,074 - Psyr_1377 0.46 +1.1 1,562,088 + Psyr_1377 0.48 +1.0 1,562,089 - Psyr_1377 0.49 +0.5 1,562,089 - Psyr_1377 0.49 +0.4 1,562,349 + -0.2 1,562,350 - +0.4 1,562,412 + -1.5 1,562,452 - +2.4 1,562,465 + -1.9 1,562,465 + -1.1 1,562,465 + +1.4 1,562,466 - +1.0 1,562,466 - -0.5 1,563,128 + Psyr_1378 0.61 +1.2 1,563,129 - Psyr_1378 0.61 +1.2 1,563,281 + Psyr_1378 0.75 -0.8 1,563,281 + Psyr_1378 0.75 -0.2 1,563,282 - Psyr_1378 0.75 +0.8 1,563,282 - Psyr_1378 0.75 -1.0 1,563,353 + Psyr_1378 0.82 +0.2
Or see this region's nucleotide sequence