Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1308

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1307 and Psyr_1308 overlap by 4 nucleotidesPsyr_1308 and Psyr_1309 are separated by 45 nucleotides Psyr_1307: Psyr_1307 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 1,482,580 to 1,484,949 _1307 Psyr_1308: Psyr_1308 - Protein-glutamate methylesterase, at 1,484,946 to 1,485,956 _1308 Psyr_1309: Psyr_1309 - response regulator receiver modulated diguanylate cyclase, at 1,486,002 to 1,487,006 _1309 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -2 -1 0 1 2at 1484.013 kb on + strand, within Psyr_1307at 1484.013 kb on + strand, within Psyr_1307at 1484.013 kb on + strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.014 kb on - strand, within Psyr_1307at 1484.143 kb on + strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.144 kb on - strand, within Psyr_1307at 1484.196 kb on + strand, within Psyr_1307at 1484.379 kb on + strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.380 kb on - strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.487 kb on + strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.488 kb on - strand, within Psyr_1307at 1484.654 kb on + strand, within Psyr_1307at 1484.655 kb on - strand, within Psyr_1307at 1484.818 kb on + strandat 1484.818 kb on + strandat 1484.870 kb on - strandat 1484.870 kb on - strandat 1484.872 kb on + strandat 1484.873 kb on - strandat 1484.873 kb on - strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.930 kb on + strandat 1484.970 kb on - strandat 1485.632 kb on + strand, within Psyr_1308at 1485.664 kb on - strand, within Psyr_1308at 1485.691 kb on - strand, within Psyr_1308at 1485.691 kb on - strand, within Psyr_1308at 1485.732 kb on + strand, within Psyr_1308at 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.858 kb on + strandat 1485.859 kb on - strandat 1485.923 kb on - strandat 1485.943 kb on + strandat 1485.943 kb on + strandat 1485.943 kb on + strandat 1485.947 kb on + strandat 1485.947 kb on + strandat 1485.947 kb on + strandat 1485.948 kb on - strandat 1486.097 kb on - strandat 1486.124 kb on + strand, within Psyr_1309at 1486.315 kb on + strand, within Psyr_1309at 1486.350 kb on + strand, within Psyr_1309at 1486.350 kb on + strand, within Psyr_1309at 1486.350 kb on + strand, within Psyr_1309at 1486.350 kb on + strand, within Psyr_1309at 1486.413 kb on + strand, within Psyr_1309at 1486.413 kb on + strand, within Psyr_1309at 1486.414 kb on - strand, within Psyr_1309at 1486.414 kb on - strand, within Psyr_1309at 1486.414 kb on - strand, within Psyr_1309at 1486.414 kb on - strand, within Psyr_1309at 1486.414 kb on - strand, within Psyr_1309at 1486.630 kb on - strand, within Psyr_1309at 1486.630 kb on - strand, within Psyr_1309at 1486.641 kb on + strand, within Psyr_1309at 1486.642 kb on - strand, within Psyr_1309at 1486.642 kb on - strand, within Psyr_1309at 1486.642 kb on - strand, within Psyr_1309at 1486.650 kb on - strand, within Psyr_1309at 1486.706 kb on + strand, within Psyr_1309at 1486.707 kb on - strand, within Psyr_1309at 1486.841 kb on + strand, within Psyr_1309

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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1,484,013 + Psyr_1307 0.60 +1.1
1,484,013 + Psyr_1307 0.60 -0.5
1,484,013 + Psyr_1307 0.60 -1.8
1,484,014 - Psyr_1307 0.61 -1.4
1,484,014 - Psyr_1307 0.61 -2.7
1,484,014 - Psyr_1307 0.61 -2.7
1,484,014 - Psyr_1307 0.61 -1.0
1,484,143 + Psyr_1307 0.66 -0.4
1,484,144 - Psyr_1307 0.66 -0.5
1,484,144 - Psyr_1307 0.66 +0.9
1,484,144 - Psyr_1307 0.66 -1.8
1,484,144 - Psyr_1307 0.66 -1.0
1,484,144 - Psyr_1307 0.66 +1.5
1,484,196 + Psyr_1307 0.68 -0.4
1,484,379 + Psyr_1307 0.76 +0.9
1,484,380 - Psyr_1307 0.76 +0.6
1,484,380 - Psyr_1307 0.76 -0.9
1,484,380 - Psyr_1307 0.76 +1.4
1,484,487 + Psyr_1307 0.80 -1.5
1,484,487 + Psyr_1307 0.80 +1.5
1,484,487 + Psyr_1307 0.80 -0.2
1,484,487 + Psyr_1307 0.80 -0.8
1,484,487 + Psyr_1307 0.80 +0.0
1,484,487 + Psyr_1307 0.80 +0.4
1,484,487 + Psyr_1307 0.80 +0.8
1,484,488 - Psyr_1307 0.81 -0.9
1,484,488 - Psyr_1307 0.81 +0.2
1,484,488 - Psyr_1307 0.81 -1.1
1,484,488 - Psyr_1307 0.81 +0.0
1,484,654 + Psyr_1307 0.88 -2.2
1,484,655 - Psyr_1307 0.88 +1.8
1,484,818 + -0.4
1,484,818 + -1.4
1,484,870 - +1.8
1,484,870 - -0.1
1,484,872 + +0.4
1,484,873 - -0.4
1,484,873 - +0.2
1,484,930 + -0.8
1,484,930 + +0.4
1,484,930 + -0.2
1,484,930 + +1.4
1,484,970 - -0.4
1,485,632 + Psyr_1308 0.68 +0.8
1,485,664 - Psyr_1308 0.71 -0.1
1,485,691 - Psyr_1308 0.74 -0.7
1,485,691 - Psyr_1308 0.74 -0.8
1,485,732 + Psyr_1308 0.78 -1.8
1,485,858 + +2.0
1,485,858 + +0.4
1,485,858 + +1.3
1,485,858 + -0.7
1,485,858 + -0.2
1,485,859 - +1.0
1,485,923 - +0.3
1,485,943 + +0.1
1,485,943 + -0.9
1,485,943 + -0.4
1,485,947 + -1.5
1,485,947 + -0.7
1,485,947 + +1.4
1,485,948 - +0.0
1,486,097 - -1.0
1,486,124 + Psyr_1309 0.12 -0.3
1,486,315 + Psyr_1309 0.31 -0.4
1,486,350 + Psyr_1309 0.35 +1.1
1,486,350 + Psyr_1309 0.35 +0.5
1,486,350 + Psyr_1309 0.35 -2.1
1,486,350 + Psyr_1309 0.35 +0.3
1,486,413 + Psyr_1309 0.41 +0.3
1,486,413 + Psyr_1309 0.41 +0.6
1,486,414 - Psyr_1309 0.41 +0.5
1,486,414 - Psyr_1309 0.41 +0.8
1,486,414 - Psyr_1309 0.41 -0.8
1,486,414 - Psyr_1309 0.41 -0.9
1,486,414 - Psyr_1309 0.41 -0.2
1,486,630 - Psyr_1309 0.62 -0.2
1,486,630 - Psyr_1309 0.62 +0.9
1,486,641 + Psyr_1309 0.64 +1.8
1,486,642 - Psyr_1309 0.64 -0.5
1,486,642 - Psyr_1309 0.64 +0.2
1,486,642 - Psyr_1309 0.64 +0.2
1,486,650 - Psyr_1309 0.64 -0.4
1,486,706 + Psyr_1309 0.70 +0.8
1,486,707 - Psyr_1309 0.70 -0.7
1,486,841 + Psyr_1309 0.83 +1.1

Or see this region's nucleotide sequence