Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0658 and Psyr_0659 are separated by 116 nucleotides Psyr_0659 and Psyr_0660 are separated by 436 nucleotides
Psyr_0658: Psyr_0658 - Zinc-containing alcohol dehydrogenase superfamily, at 746,023 to 747,036
_0658
Psyr_0659: Psyr_0659 - transcriptional regulator, LysR family, at 747,153 to 748,076
_0659
Psyr_0660: Psyr_0660 - transcriptional regulator, ArsR family, at 748,513 to 749,205
_0660
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.225 kb on + strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.226 kb on - strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.771 kb on + strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.772 kb on - strand, within Psyr_0658 at 746.912 kb on - strand, within Psyr_0658 at 747.018 kb on - strand at 747.018 kb on - strand at 747.020 kb on + strand at 747.020 kb on + strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.021 kb on - strand at 747.142 kb on - strand at 747.185 kb on - strand at 747.185 kb on - strand at 747.270 kb on - strand, within Psyr_0659 at 747.542 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.666 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.716 kb on + strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.717 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.871 kb on - strand, within Psyr_0659 at 747.992 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.034 kb on + strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.035 kb on - strand at 748.048 kb on + strand at 748.048 kb on + strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.049 kb on - strand at 748.074 kb on + strand at 748.098 kb on + strand at 748.098 kb on + strand at 748.123 kb on + strand at 748.222 kb on - strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.270 kb on + strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.271 kb on - strand at 748.288 kb on + strand at 748.289 kb on - strand at 748.299 kb on - strand at 748.367 kb on + strand at 748.368 kb on - strand at 748.404 kb on - strand at 748.404 kb on - strand at 748.410 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.600 kb on - strand, within Psyr_0660 at 748.792 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.997 kb on + strand, within Psyr_0660
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 746,225 + Psyr_0658 0.20 -0.1 746,225 + Psyr_0658 0.20 -0.2 746,225 + Psyr_0658 0.20 -0.1 746,225 + Psyr_0658 0.20 -0.5 746,225 + Psyr_0658 0.20 +0.5 746,225 + Psyr_0658 0.20 -0.6 746,226 - Psyr_0658 0.20 -0.1 746,226 - Psyr_0658 0.20 +0.4 746,226 - Psyr_0658 0.20 +0.1 746,226 - Psyr_0658 0.20 +1.2 746,226 - Psyr_0658 0.20 -0.5 746,226 - Psyr_0658 0.20 -1.3 746,226 - Psyr_0658 0.20 +0.2 746,771 + Psyr_0658 0.74 +0.0 746,771 + Psyr_0658 0.74 +0.1 746,771 + Psyr_0658 0.74 +0.7 746,771 + Psyr_0658 0.74 +1.0 746,772 - Psyr_0658 0.74 -0.1 746,772 - Psyr_0658 0.74 -1.8 746,772 - Psyr_0658 0.74 -2.6 746,772 - Psyr_0658 0.74 +0.1 746,772 - Psyr_0658 0.74 -0.4 746,912 - Psyr_0658 0.88 +0.7 747,018 - +0.9 747,018 - -0.6 747,020 + +0.9 747,020 + +0.0 747,021 - -0.6 747,021 - +0.6 747,021 - -0.7 747,021 - +0.0 747,142 - +0.1 747,185 - +0.2 747,185 - -1.7 747,270 - Psyr_0659 0.13 -0.2 747,542 + Psyr_0659 0.42 -0.3 747,666 + Psyr_0659 0.56 +0.3 747,666 + Psyr_0659 0.56 +0.2 747,666 + Psyr_0659 0.56 -1.1 747,716 + Psyr_0659 0.61 +1.2 747,716 + Psyr_0659 0.61 -0.5 747,717 - Psyr_0659 0.61 -0.7 747,717 - Psyr_0659 0.61 -1.0 747,871 - Psyr_0659 0.78 -1.0 747,871 - Psyr_0659 0.78 +0.0 747,871 - Psyr_0659 0.78 -0.7 747,992 + +0.5 748,034 + +1.1 748,034 + -0.1 748,034 + +0.1 748,035 - -0.4 748,035 - +0.9 748,035 - +0.4 748,035 - +0.6 748,035 - -0.9 748,035 - +1.1 748,035 - -0.0 748,048 + -0.4 748,048 + -0.7 748,049 - +0.7 748,049 - -0.5 748,049 - +0.3 748,074 + -1.4 748,098 + -1.5 748,098 + +0.9 748,123 + -0.3 748,222 - -1.9 748,270 + -0.1 748,270 + +0.7 748,270 + -0.3 748,271 - -0.1 748,271 - +1.0 748,271 - -0.1 748,271 - +0.3 748,271 - -0.3 748,271 - -1.0 748,271 - +0.3 748,271 - -0.6 748,288 + +0.2 748,289 - -1.1 748,299 - -1.0 748,367 + -0.7 748,368 - -1.5 748,404 - +0.6 748,404 - +1.4 748,410 + -0.6 748,412 + -0.0 748,412 + +0.7 748,412 + -0.4 748,413 - -0.6 748,413 - -0.0 748,413 - +0.2 748,423 - +0.5 748,423 - -0.9 748,423 - -0.6 748,423 - -0.7 748,426 + -1.1 748,426 + -0.2 748,426 + -0.1 748,426 + +0.4 748,426 + +0.6 748,426 + +0.3 748,426 + +1.2 748,426 + +0.2 748,426 + +0.3 748,427 - +0.1 748,427 - +0.9 748,427 - +0.5 748,427 - -0.7 748,427 - +0.3 748,428 + -0.3 748,428 + +0.0 748,428 + -0.3 748,428 + +0.6 748,428 + +0.1 748,429 - +0.2 748,429 - +0.3 748,429 - +0.5 748,429 - -1.4 748,429 - +0.2 748,429 - -0.2 748,483 + -1.6 748,483 + +0.6 748,483 + -0.5 748,483 + +0.4 748,483 + +1.2 748,484 - -0.4 748,484 - -0.4 748,484 - -0.2 748,484 - -1.1 748,484 - -0.3 748,484 - +0.5 748,484 - +0.8 748,484 - -0.1 748,599 + Psyr_0660 0.12 -0.3 748,599 + Psyr_0660 0.12 +0.9 748,599 + Psyr_0660 0.12 -0.3 748,600 - Psyr_0660 0.13 +1.4 748,792 - Psyr_0660 0.40 +0.8 748,926 - Psyr_0660 0.60 +0.3 748,926 - Psyr_0660 0.60 +0.7 748,993 + Psyr_0660 0.69 -0.8 748,993 + Psyr_0660 0.69 -1.0 748,993 + Psyr_0660 0.69 -1.0 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -1.4 748,993 + Psyr_0660 0.69 +1.1 748,993 + Psyr_0660 0.69 +1.7 748,993 + Psyr_0660 0.69 +0.9 748,993 + Psyr_0660 0.69 -0.1 748,993 + Psyr_0660 0.69 +1.2 748,993 + Psyr_0660 0.69 -0.1 748,993 + Psyr_0660 0.69 +1.0 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 -0.5 748,993 + Psyr_0660 0.69 -1.4 748,993 + Psyr_0660 0.69 +1.6 748,993 + Psyr_0660 0.69 -0.1 748,993 + Psyr_0660 0.69 +1.1 748,993 + Psyr_0660 0.69 -1.2 748,993 + Psyr_0660 0.69 +0.6 748,993 + Psyr_0660 0.69 -1.4 748,993 + Psyr_0660 0.69 -0.7 748,994 - Psyr_0660 0.69 -1.6 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 -1.2 748,994 - Psyr_0660 0.69 -0.4 748,994 - Psyr_0660 0.69 -0.0 748,994 - Psyr_0660 0.69 -1.0 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 +0.6 748,994 - Psyr_0660 0.69 +1.5 748,994 - +0.3 748,994 - Psyr_0660 0.69 +0.9 748,994 - Psyr_0660 0.69 -1.4 748,994 - Psyr_0660 0.69 +0.8 748,994 - Psyr_0660 0.69 -1.3 748,994 - Psyr_0660 0.69 +0.6 748,994 - Psyr_0660 0.69 -0.3 748,994 - Psyr_0660 0.69 -3.0 748,994 - Psyr_0660 0.69 -1.9 748,994 - Psyr_0660 0.69 +0.6 748,994 - Psyr_0660 0.69 +1.5 748,994 - Psyr_0660 0.69 +0.6 748,994 - Psyr_0660 0.69 +2.1 748,994 - Psyr_0660 0.69 +0.7 748,994 - Psyr_0660 0.69 -0.6 748,994 - Psyr_0660 0.69 -0.3 748,997 + Psyr_0660 0.70 +0.5
Or see this region's nucleotide sequence