Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0650 and Psyr_0651 are separated by 606 nucleotides Psyr_0651 and Psyr_0652 are separated by 59 nucleotides
Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041
_0650
Psyr_0651: Psyr_0651 - Helix-turn-helix, Fis-type, at 739,648 to 739,947
_0651
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 738.778 kb on + strand, within Psyr_0650 at 738.778 kb on + strand, within Psyr_0650 at 738.779 kb on - strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.817 kb on + strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.818 kb on - strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.838 kb on + strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.839 kb on - strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.841 kb on + strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.842 kb on - strand, within Psyr_0650 at 738.923 kb on + strand, within Psyr_0650 at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.151 kb on + strand at 739.251 kb on + strand at 739.251 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.291 kb on + strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.292 kb on - strand at 739.318 kb on + strand at 739.318 kb on + strand at 739.319 kb on - strand at 739.319 kb on - strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.389 kb on + strand at 739.390 kb on - strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.393 kb on + strand at 739.533 kb on + strand at 739.533 kb on + strand at 739.590 kb on - strand at 740.299 kb on + strand, within Psyr_0652 at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.852 kb on - strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 738,778 + Psyr_0650 0.71 -0.2 738,778 + Psyr_0650 0.71 +1.5 738,779 - Psyr_0650 0.71 -0.3 738,817 + Psyr_0650 0.75 +0.2 738,817 + Psyr_0650 0.75 +1.4 738,817 + Psyr_0650 0.75 +0.5 738,818 - Psyr_0650 0.75 -1.6 738,818 - Psyr_0650 0.75 -0.5 738,818 - Psyr_0650 0.75 -0.0 738,838 + Psyr_0650 0.77 +0.6 738,838 + Psyr_0650 0.77 +0.1 738,838 + Psyr_0650 0.77 +2.9 738,839 - Psyr_0650 0.77 -1.5 738,839 - Psyr_0650 0.77 +0.2 738,839 - Psyr_0650 0.77 +0.9 738,839 - Psyr_0650 0.77 -0.3 738,841 + Psyr_0650 0.78 -0.1 738,841 + Psyr_0650 0.78 +1.1 738,842 - Psyr_0650 0.78 +0.4 738,842 - Psyr_0650 0.78 +0.9 738,842 - Psyr_0650 0.78 -0.1 738,923 + Psyr_0650 0.87 -0.3 739,151 + -1.4 739,151 + -0.1 739,151 + -0.3 739,151 + -1.7 739,151 + -0.3 739,151 + -1.2 739,251 + -0.2 739,251 + -0.2 739,291 + +0.4 739,291 + -0.7 739,291 + -1.1 739,291 + +0.1 739,292 - +0.2 739,292 - +0.9 739,292 - -0.8 739,292 - -0.3 739,292 - +0.2 739,318 + -1.1 739,318 + -0.9 739,319 - -0.8 739,319 - -1.9 739,389 + +1.2 739,389 + -0.1 739,389 + -1.1 739,390 - -1.3 739,393 + +0.7 739,393 + +0.4 739,393 + -1.9 739,533 + +1.5 739,533 + +0.2 739,590 - +0.3 740,299 + Psyr_0652 0.37 -0.7 740,794 + -1.4 740,794 + +1.2 740,794 + +0.9 740,794 + -0.4 740,794 + +0.2 740,794 + -0.2 740,794 + +0.9 740,796 + -0.4 740,796 + +0.4 740,796 + -0.5 740,796 + +0.9 740,796 + +0.4 740,796 + -0.8 740,796 + +1.0 740,796 + -0.4 740,852 - +0.5 740,923 + -0.1 740,923 + -0.1 740,923 + -0.3 740,924 - +1.2 740,924 - -0.7 740,924 - +0.7 740,924 - -0.6 740,924 - -0.4 740,924 - +1.2 740,924 - -0.1 740,927 + +0.0 740,927 + +0.6 740,927 + -1.2 740,927 + +1.4 740,927 + -0.4 740,928 - +0.1
Or see this region's nucleotide sequence