Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0649

Experiment: KB with Ampicillin 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0648 and Psyr_0649 are separated by 85 nucleotidesPsyr_0649 and Psyr_0650 are separated by 244 nucleotides Psyr_0648: Psyr_0648 - transporter, putative, at 735,983 to 737,011 _0648 Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900 _0649 Psyr_0650: Psyr_0650 - Protein of unknown function RIO1, at 738,145 to 739,041 _0650 Position (kb) 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.362 kb on + strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.449 kb on - strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.932 kb on + strandat 736.932 kb on + strandat 736.932 kb on + strandat 736.933 kb on - strandat 737.033 kb on + strandat 737.033 kb on + strandat 737.055 kb on - strandat 737.085 kb on + strandat 737.085 kb on + strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.086 kb on - strandat 737.093 kb on + strandat 737.094 kb on - strandat 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.181 kb on + strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.182 kb on - strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.388 kb on + strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.389 kb on - strand, within Psyr_0649at 737.898 kb on + strandat 737.898 kb on + strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.899 kb on - strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.934 kb on + strandat 737.935 kb on - strandat 737.935 kb on - strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.955 kb on + strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.956 kb on - strandat 737.974 kb on + strandat 737.975 kb on - strandat 738.009 kb on + strandat 738.094 kb on - strandat 738.136 kb on + strandat 738.156 kb on + strandat 738.157 kb on - strandat 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.238 kb on + strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.239 kb on - strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.280 kb on + strand, within Psyr_0650at 738.281 kb on - strand, within Psyr_0650at 738.515 kb on + strand, within Psyr_0650at 738.515 kb on + strand, within Psyr_0650at 738.526 kb on + strand, within Psyr_0650at 738.778 kb on + strand, within Psyr_0650at 738.778 kb on + strand, within Psyr_0650at 738.779 kb on - strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.817 kb on + strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.818 kb on - strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.838 kb on + strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.839 kb on - strand, within Psyr_0650at 738.841 kb on + strand, within Psyr_0650at 738.841 kb on + strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650at 738.842 kb on - strand, within Psyr_0650

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml
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736,362 + Psyr_0648 0.37 -1.9
736,362 + Psyr_0648 0.37 -0.7
736,363 - Psyr_0648 0.37 -1.2
736,363 - Psyr_0648 0.37 -0.1
736,404 + Psyr_0648 0.41 +1.5
736,404 + Psyr_0648 0.41 -0.7
736,405 - Psyr_0648 0.41 +0.9
736,405 - Psyr_0648 0.41 +0.4
736,405 - Psyr_0648 0.41 -0.8
736,405 - Psyr_0648 0.41 -0.7
736,405 - Psyr_0648 0.41 -2.8
736,448 + Psyr_0648 0.45 -1.0
736,448 + Psyr_0648 0.45 -0.2
736,449 - Psyr_0648 0.45 -0.6
736,859 + Psyr_0648 0.85 -2.7
736,859 + Psyr_0648 0.85 -1.4
736,860 - Psyr_0648 0.85 -0.4
736,860 - Psyr_0648 0.85 -0.1
736,860 - Psyr_0648 0.85 +0.1
736,884 + Psyr_0648 0.88 -0.5
736,884 + Psyr_0648 0.88 +0.2
736,885 - Psyr_0648 0.88 +1.3
736,885 - Psyr_0648 0.88 -0.0
736,885 - Psyr_0648 0.88 +0.3
736,885 - Psyr_0648 0.88 -0.0
736,932 + +0.3
736,932 + -0.6
736,932 + +0.4
736,933 - +1.9
737,033 + -0.4
737,033 + +0.1
737,055 - +1.2
737,085 + -0.6
737,085 + -1.3
737,086 - -0.3
737,086 - +1.3
737,086 - -0.5
737,093 + +0.7
737,094 - +0.7
737,181 + Psyr_0649 0.10 -0.5
737,181 + Psyr_0649 0.10 -0.3
737,181 + Psyr_0649 0.10 +1.1
737,181 + Psyr_0649 0.10 +0.3
737,181 + Psyr_0649 0.10 -0.5
737,182 - Psyr_0649 0.11 -0.1
737,182 - Psyr_0649 0.11 +0.2
737,182 - Psyr_0649 0.11 +0.2
737,388 + Psyr_0649 0.36 -0.2
737,388 + Psyr_0649 0.36 +0.4
737,388 + Psyr_0649 0.36 +1.6
737,388 + Psyr_0649 0.36 +0.6
737,388 + Psyr_0649 0.36 +0.8
737,388 + Psyr_0649 0.36 +1.2
737,389 - Psyr_0649 0.36 +1.0
737,389 - Psyr_0649 0.36 +0.9
737,389 - Psyr_0649 0.36 -0.6
737,389 - Psyr_0649 0.36 -0.1
737,389 - Psyr_0649 0.36 -0.1
737,389 - Psyr_0649 0.36 -0.1
737,389 - Psyr_0649 0.36 +0.2
737,389 - Psyr_0649 0.36 -1.2
737,389 - Psyr_0649 0.36 -0.7
737,898 + -1.2
737,898 + -1.4
737,899 - -0.7
737,899 - +0.7
737,899 - +1.5
737,899 - +1.8
737,899 - -0.0
737,899 - +0.0
737,934 + +0.2
737,934 + +1.2
737,934 + +0.5
737,934 + +1.0
737,934 + +0.9
737,935 - -1.8
737,935 - +1.3
737,955 + -0.9
737,955 + -0.6
737,955 + -2.1
737,955 + -0.5
737,956 - -0.8
737,956 - +0.5
737,956 - -0.5
737,956 - -1.1
737,974 + -0.4
737,975 - +1.5
738,009 + -0.5
738,094 - +0.4
738,136 + -1.2
738,156 + -0.5
738,157 - -2.6
738,238 + Psyr_0650 0.10 +0.6
738,238 + Psyr_0650 0.10 -3.0
738,238 + Psyr_0650 0.10 +0.1
738,238 + Psyr_0650 0.10 -0.3
738,239 - Psyr_0650 0.10 +0.6
738,239 - Psyr_0650 0.10 -1.9
738,239 - Psyr_0650 0.10 -0.4
738,239 - Psyr_0650 0.10 +0.3
738,239 - Psyr_0650 0.10 -0.7
738,239 - Psyr_0650 0.10 -0.3
738,239 - Psyr_0650 0.10 -1.7
738,280 + Psyr_0650 0.15 -0.7
738,280 + Psyr_0650 0.15 -0.1
738,280 + Psyr_0650 0.15 -0.1
738,281 - Psyr_0650 0.15 -0.4
738,515 + Psyr_0650 0.41 +0.8
738,515 + Psyr_0650 0.41 +0.9
738,526 + Psyr_0650 0.42 +0.3
738,778 + Psyr_0650 0.71 -0.2
738,778 + Psyr_0650 0.71 +1.5
738,779 - Psyr_0650 0.71 -0.3
738,817 + Psyr_0650 0.75 +0.2
738,817 + Psyr_0650 0.75 +1.4
738,817 + Psyr_0650 0.75 +0.5
738,818 - Psyr_0650 0.75 -1.6
738,818 - Psyr_0650 0.75 -0.5
738,818 - Psyr_0650 0.75 -0.0
738,838 + Psyr_0650 0.77 +0.6
738,838 + Psyr_0650 0.77 +0.1
738,838 + Psyr_0650 0.77 +2.9
738,839 - Psyr_0650 0.77 -1.5
738,839 - Psyr_0650 0.77 +0.2
738,839 - Psyr_0650 0.77 +0.9
738,839 - Psyr_0650 0.77 -0.3
738,841 + Psyr_0650 0.78 -0.1
738,841 + Psyr_0650 0.78 +1.1
738,842 - Psyr_0650 0.78 +0.4
738,842 - Psyr_0650 0.78 +0.9
738,842 - Psyr_0650 0.78 -0.1

Or see this region's nucleotide sequence