Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0647 and Psyr_0648 are separated by 7 nucleotides Psyr_0648 and Psyr_0649 are separated by 85 nucleotides
Psyr_0647: Psyr_0647 - Protein of unknown function DUF726, at 734,578 to 735,975
_0647
Psyr_0648: Psyr_0648 - transporter, putative, at 735,983 to 737,011
_0648
Psyr_0649: Psyr_0649 - transcriptional regulator, AraC family, at 737,097 to 737,900
_0649
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.050 kb on + strand, within Psyr_0647 at 735.050 kb on + strand, within Psyr_0647 at 735.050 kb on + strand, within Psyr_0647 at 735.050 kb on + strand, within Psyr_0647 at 735.050 kb on + strand, within Psyr_0647 at 735.050 kb on + strand, within Psyr_0647 at 735.051 kb on - strand, within Psyr_0647 at 735.136 kb on + strand, within Psyr_0647 at 735.137 kb on - strand, within Psyr_0647 at 735.193 kb on - strand, within Psyr_0647 at 735.475 kb on + strand, within Psyr_0647 at 735.475 kb on + strand, within Psyr_0647 at 735.475 kb on + strand, within Psyr_0647 at 735.475 kb on + strand, within Psyr_0647 at 735.476 kb on - strand, within Psyr_0647 at 735.476 kb on - strand, within Psyr_0647 at 735.476 kb on - strand, within Psyr_0647 at 735.476 kb on - strand, within Psyr_0647 at 735.552 kb on + strand, within Psyr_0647 at 735.553 kb on - strand, within Psyr_0647 at 735.583 kb on + strand, within Psyr_0647 at 735.729 kb on + strand, within Psyr_0647 at 735.729 kb on + strand, within Psyr_0647 at 735.729 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.733 kb on + strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.734 kb on - strand, within Psyr_0647 at 735.937 kb on + strand at 735.938 kb on - strand at 735.973 kb on + strand at 735.973 kb on + strand at 735.973 kb on + strand at 735.973 kb on + strand at 735.973 kb on + strand at 735.974 kb on - strand at 735.974 kb on - strand at 735.974 kb on - strand at 735.974 kb on - strand at 736.044 kb on + strand at 736.044 kb on + strand at 736.044 kb on + strand at 736.044 kb on + strand at 736.044 kb on + strand at 736.089 kb on + strand, within Psyr_0648 at 736.089 kb on + strand, within Psyr_0648 at 736.089 kb on + strand, within Psyr_0648 at 736.089 kb on + strand, within Psyr_0648 at 736.090 kb on - strand, within Psyr_0648 at 736.090 kb on - strand, within Psyr_0648 at 736.362 kb on + strand, within Psyr_0648 at 736.362 kb on + strand, within Psyr_0648 at 736.363 kb on - strand, within Psyr_0648 at 736.363 kb on - strand, within Psyr_0648 at 736.404 kb on + strand, within Psyr_0648 at 736.404 kb on + strand, within Psyr_0648 at 736.405 kb on - strand, within Psyr_0648 at 736.405 kb on - strand, within Psyr_0648 at 736.405 kb on - strand, within Psyr_0648 at 736.405 kb on - strand, within Psyr_0648 at 736.405 kb on - strand, within Psyr_0648 at 736.448 kb on + strand, within Psyr_0648 at 736.448 kb on + strand, within Psyr_0648 at 736.449 kb on - strand, within Psyr_0648 at 736.859 kb on + strand, within Psyr_0648 at 736.859 kb on + strand, within Psyr_0648 at 736.860 kb on - strand, within Psyr_0648 at 736.860 kb on - strand, within Psyr_0648 at 736.860 kb on - strand, within Psyr_0648 at 736.884 kb on + strand, within Psyr_0648 at 736.884 kb on + strand, within Psyr_0648 at 736.885 kb on - strand, within Psyr_0648 at 736.885 kb on - strand, within Psyr_0648 at 736.885 kb on - strand, within Psyr_0648 at 736.885 kb on - strand, within Psyr_0648 at 736.932 kb on + strand at 736.932 kb on + strand at 736.932 kb on + strand at 736.933 kb on - strand at 737.033 kb on + strand at 737.033 kb on + strand at 737.055 kb on - strand at 737.085 kb on + strand at 737.085 kb on + strand at 737.086 kb on - strand at 737.086 kb on - strand at 737.086 kb on - strand at 737.093 kb on + strand at 737.094 kb on - strand at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.181 kb on + strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.182 kb on - strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.388 kb on + strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.389 kb on - strand, within Psyr_0649 at 737.898 kb on + strand at 737.898 kb on + strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.899 kb on - strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.934 kb on + strand at 737.935 kb on - strand at 737.935 kb on - strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.955 kb on + strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.956 kb on - strand at 737.974 kb on + strand at 737.975 kb on - strand at 738.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 735,050 + Psyr_0647 0.34 +0.9 735,050 + Psyr_0647 0.34 +1.4 735,050 + Psyr_0647 0.34 -1.7 735,050 + Psyr_0647 0.34 +0.3 735,050 + Psyr_0647 0.34 +0.7 735,050 + Psyr_0647 0.34 +0.3 735,051 - Psyr_0647 0.34 -0.1 735,136 + Psyr_0647 0.40 +0.2 735,137 - Psyr_0647 0.40 -0.1 735,193 - Psyr_0647 0.44 +1.1 735,475 + Psyr_0647 0.64 +1.2 735,475 + Psyr_0647 0.64 +0.9 735,475 + Psyr_0647 0.64 +0.9 735,475 + Psyr_0647 0.64 +0.9 735,476 - Psyr_0647 0.64 +0.9 735,476 - Psyr_0647 0.64 +0.8 735,476 - Psyr_0647 0.64 -0.3 735,476 - Psyr_0647 0.64 +0.5 735,552 + Psyr_0647 0.70 +0.9 735,553 - Psyr_0647 0.70 -0.2 735,583 + Psyr_0647 0.72 +0.3 735,729 + Psyr_0647 0.82 +0.1 735,729 + Psyr_0647 0.82 -1.2 735,729 + Psyr_0647 0.82 -1.1 735,733 + Psyr_0647 0.83 +0.4 735,733 + Psyr_0647 0.83 -0.1 735,733 + Psyr_0647 0.83 +0.6 735,733 + Psyr_0647 0.83 +0.4 735,733 + Psyr_0647 0.83 +0.3 735,733 + Psyr_0647 0.83 -0.1 735,733 + Psyr_0647 0.83 -0.8 735,733 + Psyr_0647 0.83 -0.1 735,733 + Psyr_0647 0.83 -0.5 735,733 + Psyr_0647 0.83 +0.4 735,733 + Psyr_0647 0.83 +0.6 735,733 + Psyr_0647 0.83 +0.3 735,733 + Psyr_0647 0.83 +1.6 735,734 - Psyr_0647 0.83 -1.8 735,734 - Psyr_0647 0.83 +1.0 735,734 - Psyr_0647 0.83 -1.1 735,734 - Psyr_0647 0.83 +2.5 735,734 - Psyr_0647 0.83 +0.6 735,734 - Psyr_0647 0.83 -0.1 735,734 - Psyr_0647 0.83 +0.7 735,734 - Psyr_0647 0.83 +0.2 735,734 - Psyr_0647 0.83 +0.9 735,734 - Psyr_0647 0.83 -0.3 735,734 - Psyr_0647 0.83 -0.5 735,937 + +0.9 735,938 - +1.6 735,973 + -1.0 735,973 + -0.1 735,973 + +1.5 735,973 + +0.2 735,973 + +1.5 735,974 - +0.4 735,974 - -1.7 735,974 - +0.7 735,974 - -2.1 736,044 + -0.1 736,044 + -0.7 736,044 + +0.0 736,044 + -1.5 736,044 + +0.2 736,089 + Psyr_0648 0.10 -1.5 736,089 + Psyr_0648 0.10 -2.7 736,089 + Psyr_0648 0.10 -0.8 736,089 + Psyr_0648 0.10 -0.2 736,090 - Psyr_0648 0.10 +2.1 736,090 - Psyr_0648 0.10 -0.2 736,362 + Psyr_0648 0.37 -1.9 736,362 + Psyr_0648 0.37 -0.7 736,363 - Psyr_0648 0.37 -1.2 736,363 - Psyr_0648 0.37 -0.1 736,404 + Psyr_0648 0.41 +1.5 736,404 + Psyr_0648 0.41 -0.7 736,405 - Psyr_0648 0.41 +0.9 736,405 - Psyr_0648 0.41 +0.4 736,405 - Psyr_0648 0.41 -0.8 736,405 - Psyr_0648 0.41 -0.7 736,405 - Psyr_0648 0.41 -2.8 736,448 + Psyr_0648 0.45 -1.0 736,448 + Psyr_0648 0.45 -0.2 736,449 - Psyr_0648 0.45 -0.6 736,859 + Psyr_0648 0.85 -2.7 736,859 + Psyr_0648 0.85 -1.4 736,860 - Psyr_0648 0.85 -0.4 736,860 - Psyr_0648 0.85 -0.1 736,860 - Psyr_0648 0.85 +0.1 736,884 + Psyr_0648 0.88 -0.5 736,884 + Psyr_0648 0.88 +0.2 736,885 - Psyr_0648 0.88 +1.3 736,885 - Psyr_0648 0.88 -0.0 736,885 - Psyr_0648 0.88 +0.3 736,885 - Psyr_0648 0.88 -0.0 736,932 + +0.3 736,932 + -0.6 736,932 + +0.4 736,933 - +1.9 737,033 + -0.4 737,033 + +0.1 737,055 - +1.2 737,085 + -0.6 737,085 + -1.3 737,086 - -0.3 737,086 - +1.3 737,086 - -0.5 737,093 + +0.7 737,094 - +0.7 737,181 + Psyr_0649 0.10 -0.5 737,181 + Psyr_0649 0.10 -0.3 737,181 + Psyr_0649 0.10 +1.1 737,181 + Psyr_0649 0.10 +0.3 737,181 + Psyr_0649 0.10 -0.5 737,182 - Psyr_0649 0.11 -0.1 737,182 - Psyr_0649 0.11 +0.2 737,182 - Psyr_0649 0.11 +0.2 737,388 + Psyr_0649 0.36 -0.2 737,388 + Psyr_0649 0.36 +0.4 737,388 + Psyr_0649 0.36 +1.6 737,388 + Psyr_0649 0.36 +0.6 737,388 + Psyr_0649 0.36 +0.8 737,388 + Psyr_0649 0.36 +1.2 737,389 - Psyr_0649 0.36 +1.0 737,389 - Psyr_0649 0.36 +0.9 737,389 - Psyr_0649 0.36 -0.6 737,389 - Psyr_0649 0.36 -0.1 737,389 - Psyr_0649 0.36 -0.1 737,389 - Psyr_0649 0.36 -0.1 737,389 - Psyr_0649 0.36 +0.2 737,389 - Psyr_0649 0.36 -1.2 737,389 - Psyr_0649 0.36 -0.7 737,898 + -1.2 737,898 + -1.4 737,899 - -0.7 737,899 - +0.7 737,899 - +1.5 737,899 - +1.8 737,899 - -0.0 737,899 - +0.0 737,934 + +0.2 737,934 + +1.2 737,934 + +0.5 737,934 + +1.0 737,934 + +0.9 737,935 - -1.8 737,935 - +1.3 737,955 + -0.9 737,955 + -0.6 737,955 + -2.1 737,955 + -0.5 737,956 - -0.8 737,956 - +0.5 737,956 - -0.5 737,956 - -1.1 737,974 + -0.4 737,975 - +1.5 738,009 + -0.5
Or see this region's nucleotide sequence