Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0168 and Psyr_0169 are separated by 179 nucleotides Psyr_0169 and Psyr_0170 are separated by 177 nucleotides Psyr_0170 and Psyr_0171 are separated by 167 nucleotides
Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760
_0168
Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842
_0169
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.989 kb on - strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.273 kb on - strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.634 kb on + strand at 183.635 kb on - strand at 183.677 kb on + strand at 183.678 kb on - strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.827 kb on - strand at 183.833 kb on + strand at 183.834 kb on - strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.899 kb on - strand at 183.899 kb on - strand at 184.017 kb on - strand at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.751 kb on + strand, within Psyr_0169 at 184.752 kb on - strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.855 kb on + strand at 184.855 kb on + strand at 184.856 kb on - strand at 184.864 kb on + strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.947 kb on + strand at 184.948 kb on - strand at 184.948 kb on - strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 185.169 kb on - strand, within Psyr_0170 at 185.225 kb on - strand, within Psyr_0170 at 185.385 kb on + strand, within Psyr_0170 at 185.386 kb on - strand, within Psyr_0170 at 185.445 kb on - strand at 185.527 kb on - strand at 185.554 kb on + strand at 185.566 kb on + strand at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.683 kb on - strand, within Psyr_0171
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 182,989 - Psyr_0168 0.50 -0.7 183,116 + Psyr_0168 0.58 -0.6 183,116 + Psyr_0168 0.58 +0.5 183,117 - Psyr_0168 0.58 +0.5 183,117 - Psyr_0168 0.58 +1.4 183,117 - Psyr_0168 0.58 -0.3 183,117 - Psyr_0168 0.58 +0.1 183,272 + Psyr_0168 0.68 +2.0 183,272 + Psyr_0168 0.68 -0.5 183,273 - Psyr_0168 0.68 +0.9 183,366 + Psyr_0168 0.74 -0.4 183,366 + Psyr_0168 0.74 -0.6 183,366 + Psyr_0168 0.74 +1.1 183,366 + Psyr_0168 0.74 -0.7 183,366 + Psyr_0168 0.74 -0.9 183,366 + Psyr_0168 0.74 -0.5 183,366 + Psyr_0168 0.74 -1.5 183,367 - Psyr_0168 0.74 -0.5 183,367 - Psyr_0168 0.74 +0.5 183,367 - Psyr_0168 0.74 +0.4 183,367 - Psyr_0168 0.74 -1.7 183,464 + Psyr_0168 0.81 +0.6 183,464 + Psyr_0168 0.81 +0.5 183,464 + Psyr_0168 0.81 -1.7 183,464 + Psyr_0168 0.81 +0.4 183,465 - Psyr_0168 0.81 +1.9 183,465 - Psyr_0168 0.81 +1.1 183,465 - Psyr_0168 0.81 -0.0 183,465 - Psyr_0168 0.81 -1.5 183,465 - Psyr_0168 0.81 -0.3 183,634 + -1.3 183,635 - +1.0 183,677 + +0.1 183,678 - +0.2 183,735 + -0.2 183,735 + -0.9 183,735 + -2.3 183,735 + +0.2 183,736 - -0.9 183,736 - +1.7 183,736 - -3.0 183,736 - +0.8 183,827 - +0.1 183,833 + +0.3 183,834 - +0.3 183,898 + +1.1 183,898 + +0.4 183,898 + +0.6 183,899 - -0.5 183,899 - +1.1 184,017 - -0.7 184,403 + Psyr_0169 0.51 +0.1 184,403 + Psyr_0169 0.51 -0.5 184,403 + Psyr_0169 0.51 -1.3 184,403 + Psyr_0169 0.51 -0.9 184,404 - Psyr_0169 0.51 -0.5 184,404 - Psyr_0169 0.51 -0.4 184,404 - Psyr_0169 0.51 -0.6 184,404 - Psyr_0169 0.51 +0.2 184,751 + Psyr_0169 0.90 +0.2 184,752 - +0.2 184,842 + +1.1 184,842 + -0.9 184,842 + -0.3 184,842 + +0.0 184,842 + +0.5 184,842 + +0.5 184,842 + -0.1 184,842 + -0.5 184,842 + -0.0 184,842 + +0.3 184,842 + -0.1 184,843 - -0.1 184,843 - -0.1 184,843 - -0.7 184,843 - +0.3 184,843 - -1.0 184,843 - -0.6 184,843 - +0.2 184,843 - -0.8 184,843 - +0.9 184,843 - +0.9 184,843 - -3.3 184,843 - -1.1 184,843 - -1.0 184,843 - +0.9 184,843 - +0.4 184,843 - -0.4 184,843 - -0.5 184,843 - -0.9 184,843 - +0.8 184,843 - +0.4 184,843 - -0.7 184,843 - -0.5 184,846 + +0.8 184,846 + +0.4 184,846 + -0.2 184,847 - -0.0 184,847 - -2.1 184,847 - -0.8 184,847 - -0.4 184,855 + -0.9 184,855 + +0.0 184,856 - +0.9 184,864 + -0.9 184,865 - +0.7 184,865 - -1.1 184,865 - +1.0 184,865 - +0.5 184,947 + -0.2 184,948 - +0.1 184,948 - +0.1 184,954 + -0.5 184,954 + -0.5 184,954 + +0.1 184,954 + -0.3 184,955 - +1.4 184,955 - -1.0 184,955 - +0.8 184,955 - +0.5 184,955 - +0.1 185,169 - Psyr_0170 0.37 +0.0 185,225 - Psyr_0170 0.50 +0.7 185,385 + Psyr_0170 0.89 -0.8 185,386 - Psyr_0170 0.90 -0.4 185,445 - +1.0 185,527 - +0.8 185,554 + -0.2 185,566 + +0.7 185,682 + Psyr_0171 0.11 -0.7 185,682 + Psyr_0171 0.11 +0.0 185,682 + Psyr_0171 0.11 +0.1 185,683 - Psyr_0171 0.11 +0.5
Or see this region's nucleotide sequence