Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3025 and Pf6N2E2_3026 overlap by 4 nucleotides Pf6N2E2_3026 and Pf6N2E2_3027 are separated by 11 nucleotides Pf6N2E2_3027 and Pf6N2E2_3028 are separated by 3 nucleotides Pf6N2E2_3028 and Pf6N2E2_3029 are separated by 36 nucleotides
Pf6N2E2_3025 - Baseplate assembly protein J, at 3,511,244 to 3,512,239
_3025
Pf6N2E2_3026 - Baseplate assembly protein W, at 3,512,236 to 3,512,568
_3026
Pf6N2E2_3027 - Baseplate assembly protein V, at 3,512,580 to 3,513,191
_3027
Pf6N2E2_3028 - FIG00959937: hypothetical protein, at 3,513,195 to 3,513,707
_3028
Pf6N2E2_3029 - Holin, at 3,513,744 to 3,514,094
_3029
Position (kb)
3512
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.716 kb on + strand, within Pf6N2E2_3025 at 3511.717 kb on - strand, within Pf6N2E2_3025 at 3511.717 kb on - strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.730 kb on + strand, within Pf6N2E2_3025 at 3511.731 kb on - strand, within Pf6N2E2_3025 at 3511.780 kb on + strand, within Pf6N2E2_3025 at 3511.840 kb on - strand, within Pf6N2E2_3025 at 3511.840 kb on - strand, within Pf6N2E2_3025 at 3511.873 kb on - strand, within Pf6N2E2_3025 at 3512.010 kb on + strand, within Pf6N2E2_3025 at 3512.010 kb on + strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.011 kb on - strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.133 kb on + strand, within Pf6N2E2_3025 at 3512.134 kb on - strand, within Pf6N2E2_3025 at 3512.366 kb on + strand, within Pf6N2E2_3026 at 3512.367 kb on - strand, within Pf6N2E2_3026 at 3512.453 kb on + strand, within Pf6N2E2_3026 at 3512.453 kb on + strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.454 kb on - strand, within Pf6N2E2_3026 at 3512.512 kb on + strand, within Pf6N2E2_3026 at 3512.512 kb on + strand, within Pf6N2E2_3026 at 3512.548 kb on - strand at 3512.582 kb on - strand at 3512.721 kb on - strand, within Pf6N2E2_3027 at 3513.214 kb on + strand at 3513.214 kb on + strand at 3513.214 kb on + strand at 3513.240 kb on + strand at 3513.252 kb on - strand, within Pf6N2E2_3028 at 3513.305 kb on - strand, within Pf6N2E2_3028 at 3513.340 kb on + strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.341 kb on - strand, within Pf6N2E2_3028 at 3513.640 kb on + strand, within Pf6N2E2_3028 at 3513.641 kb on - strand, within Pf6N2E2_3028 at 3513.724 kb on + strand at 3513.724 kb on + strand at 3513.725 kb on - strand at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.901 kb on + strand, within Pf6N2E2_3029 at 3513.902 kb on - strand, within Pf6N2E2_3029 at 3513.902 kb on - strand, within Pf6N2E2_3029 at 3514.116 kb on + strand at 3514.117 kb on - strand at 3514.136 kb on - strand at 3514.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,511,716 + Pf6N2E2_3025 0.47 -0.7 3,511,716 + Pf6N2E2_3025 0.47 +0.5 3,511,716 + Pf6N2E2_3025 0.47 +1.3 3,511,717 - Pf6N2E2_3025 0.47 -0.2 3,511,717 - Pf6N2E2_3025 0.47 -2.0 3,511,730 + Pf6N2E2_3025 0.49 +0.3 3,511,730 + Pf6N2E2_3025 0.49 +0.7 3,511,730 + Pf6N2E2_3025 0.49 +0.3 3,511,731 - Pf6N2E2_3025 0.49 +1.4 3,511,780 + Pf6N2E2_3025 0.54 +0.8 3,511,840 - Pf6N2E2_3025 0.60 -0.3 3,511,840 - Pf6N2E2_3025 0.60 +0.6 3,511,873 - Pf6N2E2_3025 0.63 +0.6 3,512,010 + Pf6N2E2_3025 0.77 -0.4 3,512,010 + Pf6N2E2_3025 0.77 +0.8 3,512,011 - Pf6N2E2_3025 0.77 +0.2 3,512,011 - Pf6N2E2_3025 0.77 +0.5 3,512,011 - Pf6N2E2_3025 0.77 +1.0 3,512,133 + Pf6N2E2_3025 0.89 +0.2 3,512,133 + Pf6N2E2_3025 0.89 -0.7 3,512,133 + Pf6N2E2_3025 0.89 +0.2 3,512,134 - Pf6N2E2_3025 0.89 +0.5 3,512,366 + Pf6N2E2_3026 0.39 +1.1 3,512,367 - Pf6N2E2_3026 0.39 -0.4 3,512,453 + Pf6N2E2_3026 0.65 -0.5 3,512,453 + Pf6N2E2_3026 0.65 -0.1 3,512,454 - Pf6N2E2_3026 0.65 -0.9 3,512,454 - Pf6N2E2_3026 0.65 +0.6 3,512,454 - Pf6N2E2_3026 0.65 -0.5 3,512,454 - Pf6N2E2_3026 0.65 -0.5 3,512,454 - Pf6N2E2_3026 0.65 +0.0 3,512,512 + Pf6N2E2_3026 0.83 +0.3 3,512,512 + Pf6N2E2_3026 0.83 -0.1 3,512,548 - -0.0 3,512,582 - -0.2 3,512,721 - Pf6N2E2_3027 0.23 +0.4 3,513,214 + -0.2 3,513,214 + +0.1 3,513,214 + +0.8 3,513,240 + +0.2 3,513,252 - Pf6N2E2_3028 0.11 +1.3 3,513,305 - Pf6N2E2_3028 0.21 -0.2 3,513,340 + Pf6N2E2_3028 0.28 +1.2 3,513,341 - Pf6N2E2_3028 0.28 -0.1 3,513,341 - Pf6N2E2_3028 0.28 +0.5 3,513,341 - Pf6N2E2_3028 0.28 -0.2 3,513,341 - Pf6N2E2_3028 0.28 -0.2 3,513,640 + Pf6N2E2_3028 0.87 -0.3 3,513,641 - Pf6N2E2_3028 0.87 +0.2 3,513,724 + +1.1 3,513,724 + +0.5 3,513,725 - -0.7 3,513,901 + Pf6N2E2_3029 0.45 +0.5 3,513,901 + Pf6N2E2_3029 0.45 +1.2 3,513,901 + Pf6N2E2_3029 0.45 +0.1 3,513,901 + Pf6N2E2_3029 0.45 -0.1 3,513,901 + Pf6N2E2_3029 0.45 +0.7 3,513,901 + Pf6N2E2_3029 0.45 +0.8 3,513,901 + Pf6N2E2_3029 0.45 +0.7 3,513,902 - Pf6N2E2_3029 0.45 -0.1 3,513,902 - Pf6N2E2_3029 0.45 -0.8 3,514,116 + +0.9 3,514,117 - -0.6 3,514,136 - -0.3 3,514,163 - -0.7
Or see this region's nucleotide sequence