Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5287 and Pf1N1B4_5288 are separated by 501 nucleotides
Pf1N1B4_5287 - hypothetical protein, at 41,110 to 41,250
_5287
Pf1N1B4_5288 - hypothetical protein, at 41,752 to 42,228
_5288
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.895 kb on + strand at 40.895 kb on + strand at 40.920 kb on + strand at 40.923 kb on + strand at 41.088 kb on - strand at 41.166 kb on + strand, within Pf1N1B4_5287 at 41.183 kb on + strand, within Pf1N1B4_5287 at 41.283 kb on + strand at 41.283 kb on + strand at 41.283 kb on + strand at 41.284 kb on - strand at 41.429 kb on + strand at 41.429 kb on + strand at 41.429 kb on + strand at 41.430 kb on - strand at 41.483 kb on + strand at 41.596 kb on + strand at 41.597 kb on - strand at 41.597 kb on - strand at 41.659 kb on - strand at 41.782 kb on + strand at 41.783 kb on - strand at 41.837 kb on + strand, within Pf1N1B4_5288 at 41.838 kb on - strand, within Pf1N1B4_5288 at 42.039 kb on + strand, within Pf1N1B4_5288 at 42.057 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.152 kb on + strand, within Pf1N1B4_5288 at 42.153 kb on - strand, within Pf1N1B4_5288 at 42.226 kb on + strand at 42.226 kb on + strand at 42.227 kb on - strand at 42.245 kb on + strand at 42.246 kb on - strand at 42.246 kb on - strand at 42.246 kb on - strand at 42.287 kb on + strand at 42.287 kb on + strand at 42.288 kb on - strand at 42.290 kb on - strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.308 kb on + strand at 42.309 kb on - strand at 42.309 kb on - strand at 42.309 kb on - strand at 42.310 kb on + strand at 42.311 kb on - strand at 42.352 kb on + strand at 42.353 kb on - strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.375 kb on + strand at 42.376 kb on - strand at 42.376 kb on - strand at 42.380 kb on - strand at 42.380 kb on - strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.410 kb on + strand at 42.411 kb on - strand at 42.411 kb on - strand at 42.411 kb on - strand at 42.421 kb on + strand at 42.463 kb on + strand at 42.464 kb on - strand at 42.556 kb on + strand at 42.557 kb on - strand at 42.586 kb on + strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.590 kb on + strand at 42.591 kb on - strand at 42.591 kb on - strand at 42.591 kb on - strand at 42.662 kb on + strand at 42.662 kb on + strand at 42.663 kb on - strand at 42.747 kb on + strand at 42.748 kb on - strand at 42.784 kb on + strand at 42.814 kb on + strand at 42.849 kb on + strand at 42.940 kb on + strand at 42.940 kb on + strand at 43.041 kb on - strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.042 kb on + strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.043 kb on - strand at 43.099 kb on - strand at 43.099 kb on - strand at 43.104 kb on - strand at 43.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 40,895 + +0.1 40,895 + +0.1 40,920 + -0.5 40,923 + +0.2 41,088 - +0.1 41,166 + Pf1N1B4_5287 0.40 -1.0 41,183 + Pf1N1B4_5287 0.52 -0.0 41,283 + -0.1 41,283 + +0.1 41,283 + -2.0 41,284 - +0.8 41,429 + +0.4 41,429 + -1.8 41,429 + +0.7 41,430 - +0.0 41,483 + -0.6 41,596 + +1.2 41,597 - +1.2 41,597 - -1.5 41,659 - +0.8 41,782 + +1.8 41,783 - +0.5 41,837 + Pf1N1B4_5288 0.18 -0.8 41,838 - Pf1N1B4_5288 0.18 -1.2 42,039 + Pf1N1B4_5288 0.60 +0.4 42,057 + Pf1N1B4_5288 0.64 -0.2 42,152 + Pf1N1B4_5288 0.84 -0.3 42,152 + Pf1N1B4_5288 0.84 -1.0 42,152 + Pf1N1B4_5288 0.84 -1.2 42,152 + Pf1N1B4_5288 0.84 -1.0 42,153 - Pf1N1B4_5288 0.84 -0.4 42,226 + +1.2 42,226 + +0.2 42,227 - +0.2 42,245 + +0.2 42,246 - -1.3 42,246 - -0.7 42,246 - +1.2 42,287 + -0.4 42,287 + +1.5 42,288 - +0.6 42,290 - -0.2 42,308 + +0.1 42,308 + -0.0 42,308 + -0.2 42,308 + -0.2 42,308 + -2.1 42,308 + -0.9 42,308 + -0.2 42,308 + +0.2 42,308 + -0.5 42,308 + +0.8 42,308 + +1.2 42,309 - +0.5 42,309 - +0.2 42,309 - -0.5 42,310 + +0.6 42,311 - +0.8 42,352 + +0.2 42,353 - -0.3 42,375 + +0.0 42,375 + +0.8 42,375 + +0.4 42,375 + -1.3 42,375 + -0.5 42,376 - -0.1 42,376 - +1.8 42,380 - +0.3 42,380 - +0.6 42,410 + -1.2 42,410 + +1.4 42,410 + +0.0 42,410 + +0.8 42,411 - -1.0 42,411 - +0.7 42,411 - -0.1 42,421 + -1.1 42,463 + +1.4 42,464 - -0.6 42,556 + -0.9 42,557 - -0.0 42,586 + +0.5 42,587 - +0.1 42,587 - -0.8 42,590 + -1.2 42,590 + -0.8 42,590 + +0.8 42,590 + +1.5 42,591 - -1.0 42,591 - +0.1 42,591 - -0.4 42,662 + +0.5 42,662 + +1.2 42,663 - -0.0 42,747 + -0.2 42,748 - +0.8 42,784 + +0.0 42,814 + -0.2 42,849 + +0.8 42,940 + +0.2 42,940 + -0.8 43,041 - +0.8 43,042 + +0.6 43,042 + +0.1 43,042 + -1.8 43,042 + -0.5 43,042 + -0.5 43,042 + -0.3 43,043 - +0.2 43,043 - -0.1 43,043 - -1.0 43,043 - -0.6 43,099 - +0.2 43,099 - -0.5 43,104 - -1.2 43,155 - -1.2
Or see this region's nucleotide sequence