Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4158 and Pf1N1B4_4159 overlap by 1 nucleotides Pf1N1B4_4159 and Pf1N1B4_4160 overlap by 4 nucleotides Pf1N1B4_4160 and Pf1N1B4_4161 overlap by 4 nucleotides
Pf1N1B4_4158 - FIG00955149: hypothetical protein, at 4,602,890 to 4,604,377
_4158
Pf1N1B4_4159 - FIG00955149: hypothetical protein, at 4,604,377 to 4,604,604
_4159
Pf1N1B4_4160 - FIG00956113: hypothetical protein, at 4,604,601 to 4,605,239
_4160
Pf1N1B4_4161 - UPF0192 protein all5100 precursor, at 4,605,236 to 4,609,810
_4161
Position (kb)
4604
4605 Strain fitness (log2 ratio)
-2
-1
0
1 at 4603.406 kb on - strand, within Pf1N1B4_4158 at 4603.472 kb on + strand, within Pf1N1B4_4158 at 4603.473 kb on - strand, within Pf1N1B4_4158 at 4603.473 kb on - strand, within Pf1N1B4_4158 at 4604.003 kb on + strand, within Pf1N1B4_4158 at 4604.029 kb on - strand, within Pf1N1B4_4158 at 4604.029 kb on - strand, within Pf1N1B4_4158 at 4604.244 kb on + strand at 4604.386 kb on + strand at 4604.387 kb on - strand at 4604.468 kb on - strand, within Pf1N1B4_4159 at 4604.468 kb on - strand, within Pf1N1B4_4159 at 4604.486 kb on - strand, within Pf1N1B4_4159 at 4604.527 kb on + strand, within Pf1N1B4_4159 at 4604.528 kb on - strand, within Pf1N1B4_4159 at 4604.528 kb on - strand, within Pf1N1B4_4159 at 4604.950 kb on - strand, within Pf1N1B4_4160 at 4605.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,603,406 - Pf1N1B4_4158 0.35 -0.3 4,603,472 + Pf1N1B4_4158 0.39 +0.6 4,603,473 - Pf1N1B4_4158 0.39 +0.4 4,603,473 - Pf1N1B4_4158 0.39 -0.1 4,604,003 + Pf1N1B4_4158 0.75 +0.1 4,604,029 - Pf1N1B4_4158 0.77 +1.0 4,604,029 - Pf1N1B4_4158 0.77 -1.3 4,604,244 + -0.3 4,604,386 + -0.8 4,604,387 - +0.1 4,604,468 - Pf1N1B4_4159 0.40 +0.7 4,604,468 - Pf1N1B4_4159 0.40 -1.6 4,604,486 - Pf1N1B4_4159 0.48 -0.6 4,604,527 + Pf1N1B4_4159 0.66 -0.3 4,604,528 - Pf1N1B4_4159 0.66 -2.3 4,604,528 - Pf1N1B4_4159 0.66 -0.9 4,604,950 - Pf1N1B4_4160 0.55 -1.1 4,605,468 - -0.9
Or see this region's nucleotide sequence