Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4159

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4158 and Pf1N1B4_4159 overlap by 1 nucleotidesPf1N1B4_4159 and Pf1N1B4_4160 overlap by 4 nucleotidesPf1N1B4_4160 and Pf1N1B4_4161 overlap by 4 nucleotides Pf1N1B4_4158 - FIG00955149: hypothetical protein, at 4,602,890 to 4,604,377 _4158 Pf1N1B4_4159 - FIG00955149: hypothetical protein, at 4,604,377 to 4,604,604 _4159 Pf1N1B4_4160 - FIG00956113: hypothetical protein, at 4,604,601 to 4,605,239 _4160 Pf1N1B4_4161 - UPF0192 protein all5100 precursor, at 4,605,236 to 4,609,810 _4161 Position (kb) 4604 4605Strain fitness (log2 ratio) -2 -1 0 1at 4603.406 kb on - strand, within Pf1N1B4_4158at 4603.472 kb on + strand, within Pf1N1B4_4158at 4603.473 kb on - strand, within Pf1N1B4_4158at 4603.473 kb on - strand, within Pf1N1B4_4158at 4604.003 kb on + strand, within Pf1N1B4_4158at 4604.029 kb on - strand, within Pf1N1B4_4158at 4604.029 kb on - strand, within Pf1N1B4_4158at 4604.244 kb on + strandat 4604.386 kb on + strandat 4604.387 kb on - strandat 4604.468 kb on - strand, within Pf1N1B4_4159at 4604.468 kb on - strand, within Pf1N1B4_4159at 4604.486 kb on - strand, within Pf1N1B4_4159at 4604.527 kb on + strand, within Pf1N1B4_4159at 4604.528 kb on - strand, within Pf1N1B4_4159at 4604.528 kb on - strand, within Pf1N1B4_4159at 4604.950 kb on - strand, within Pf1N1B4_4160at 4605.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,603,406 - Pf1N1B4_4158 0.35 -0.3
4,603,472 + Pf1N1B4_4158 0.39 +0.6
4,603,473 - Pf1N1B4_4158 0.39 +0.4
4,603,473 - Pf1N1B4_4158 0.39 -0.1
4,604,003 + Pf1N1B4_4158 0.75 +0.1
4,604,029 - Pf1N1B4_4158 0.77 +1.0
4,604,029 - Pf1N1B4_4158 0.77 -1.3
4,604,244 + -0.3
4,604,386 + -0.8
4,604,387 - +0.1
4,604,468 - Pf1N1B4_4159 0.40 +0.7
4,604,468 - Pf1N1B4_4159 0.40 -1.6
4,604,486 - Pf1N1B4_4159 0.48 -0.6
4,604,527 + Pf1N1B4_4159 0.66 -0.3
4,604,528 - Pf1N1B4_4159 0.66 -2.3
4,604,528 - Pf1N1B4_4159 0.66 -0.9
4,604,950 - Pf1N1B4_4160 0.55 -1.1
4,605,468 - -0.9

Or see this region's nucleotide sequence