Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_409

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_407 and Pf1N1B4_408 overlap by 4 nucleotidesPf1N1B4_408 and Pf1N1B4_409 are separated by 245 nucleotidesPf1N1B4_409 and Pf1N1B4_410 are separated by 9 nucleotides Pf1N1B4_407 - ADP-ribosylglycohydrolase YegU (EC 3.2.-.-), at 475,906 to 476,904 _407 Pf1N1B4_408 - Transcriptional regulator, GntR family, at 476,901 to 477,578 _408 Pf1N1B4_409 - ABC transporter for D-galactose/L-arabinose, permease component (from data), at 477,824 to 478,792 _409 Pf1N1B4_410 - ABC transporter for D-galactose/L-arabinose, ATPase component (from data), at 478,802 to 480,346 _410 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 476.870 kb on + strandat 476.870 kb on + strandat 476.870 kb on + strandat 476.870 kb on + strandat 476.871 kb on - strandat 476.871 kb on - strandat 476.871 kb on - strandat 476.871 kb on - strandat 476.871 kb on - strandat 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.992 kb on + strand, within Pf1N1B4_408at 476.993 kb on - strand, within Pf1N1B4_408at 476.993 kb on - strand, within Pf1N1B4_408at 476.993 kb on - strand, within Pf1N1B4_408at 476.993 kb on - strand, within Pf1N1B4_408at 477.106 kb on + strand, within Pf1N1B4_408at 477.106 kb on + strand, within Pf1N1B4_408at 477.106 kb on + strand, within Pf1N1B4_408at 477.106 kb on + strand, within Pf1N1B4_408at 477.324 kb on - strand, within Pf1N1B4_408at 477.522 kb on + strandat 477.522 kb on + strandat 477.522 kb on + strandat 477.522 kb on + strandat 477.608 kb on + strandat 477.609 kb on - strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.616 kb on + strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.617 kb on - strandat 477.637 kb on + strandat 477.637 kb on + strandat 477.637 kb on + strandat 477.637 kb on + strandat 477.667 kb on + strandat 477.668 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.891 kb on + strandat 477.892 kb on - strandat 478.210 kb on - strand, within Pf1N1B4_409at 478.210 kb on - strand, within Pf1N1B4_409at 478.218 kb on + strand, within Pf1N1B4_409at 478.218 kb on + strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.219 kb on - strand, within Pf1N1B4_409at 478.356 kb on + strand, within Pf1N1B4_409at 478.357 kb on - strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.587 kb on + strand, within Pf1N1B4_409at 478.588 kb on - strand, within Pf1N1B4_409at 478.619 kb on - strand, within Pf1N1B4_409at 478.677 kb on - strand, within Pf1N1B4_409at 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.792 kb on + strandat 478.793 kb on - strandat 478.793 kb on - strandat 478.793 kb on - strandat 478.930 kb on + strandat 478.931 kb on - strandat 478.993 kb on + strand, within Pf1N1B4_410at 478.994 kb on - strand, within Pf1N1B4_410at 479.008 kb on - strand, within Pf1N1B4_410at 479.027 kb on + strandat 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.027 kb on + strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.028 kb on - strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strand, within Pf1N1B4_410at 479.127 kb on + strandat 479.128 kb on - strandat 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strand, within Pf1N1B4_410at 479.128 kb on - strandat 479.128 kb on - strand, within Pf1N1B4_410at 479.577 kb on + strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.578 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.616 kb on - strand, within Pf1N1B4_410at 479.693 kb on - strand, within Pf1N1B4_410at 479.730 kb on + strand, within Pf1N1B4_410at 479.730 kb on + strandat 479.731 kb on - strandat 479.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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476,870 + -0.1
476,870 + +0.4
476,870 + -1.1
476,870 + -0.5
476,871 - +0.0
476,871 - +0.1
476,871 - +0.8
476,871 - -0.4
476,871 - -0.4
476,992 + Pf1N1B4_408 0.13 +0.4
476,992 + Pf1N1B4_408 0.13 -1.0
476,992 + Pf1N1B4_408 0.13 -2.0
476,992 + Pf1N1B4_408 0.13 -1.1
476,992 + Pf1N1B4_408 0.13 +1.0
476,992 + Pf1N1B4_408 0.13 +0.3
476,992 + Pf1N1B4_408 0.13 +0.1
476,992 + Pf1N1B4_408 0.13 -1.3
476,992 + Pf1N1B4_408 0.13 +0.0
476,993 - Pf1N1B4_408 0.14 -1.0
476,993 - Pf1N1B4_408 0.14 +0.5
476,993 - Pf1N1B4_408 0.14 -0.0
476,993 - Pf1N1B4_408 0.14 +0.6
477,106 + Pf1N1B4_408 0.30 +0.3
477,106 + Pf1N1B4_408 0.30 +0.0
477,106 + Pf1N1B4_408 0.30 +0.5
477,106 + Pf1N1B4_408 0.30 +0.3
477,324 - Pf1N1B4_408 0.62 -1.4
477,522 + +0.0
477,522 + +0.1
477,522 + -0.6
477,522 + +2.3
477,608 + +2.0
477,609 - +0.0
477,616 + +0.5
477,616 + +0.4
477,616 + +0.0
477,616 + -0.4
477,616 + +0.3
477,616 + -0.3
477,616 + +0.6
477,616 + +1.2
477,616 + +0.5
477,616 + -0.2
477,617 - +0.1
477,617 - -2.3
477,617 - +0.2
477,617 - +2.3
477,617 - -0.7
477,617 - +1.3
477,617 - +0.1
477,617 - +0.3
477,637 + -0.1
477,637 + -0.2
477,637 + -1.0
477,637 + -1.3
477,667 + -0.2
477,668 - -0.6
477,886 - +0.0
477,886 - -0.7
477,886 - +0.4
477,886 - -0.4
477,891 + -0.2
477,892 - +0.8
478,210 - Pf1N1B4_409 0.40 +0.1
478,210 - Pf1N1B4_409 0.40 +0.3
478,218 + Pf1N1B4_409 0.41 +2.6
478,218 + Pf1N1B4_409 0.41 +1.2
478,219 - Pf1N1B4_409 0.41 +1.0
478,219 - Pf1N1B4_409 0.41 +0.6
478,219 - Pf1N1B4_409 0.41 +1.0
478,219 - Pf1N1B4_409 0.41 +0.1
478,219 - Pf1N1B4_409 0.41 +0.0
478,219 - Pf1N1B4_409 0.41 +0.0
478,356 + Pf1N1B4_409 0.55 -0.1
478,357 - Pf1N1B4_409 0.55 -2.1
478,587 + Pf1N1B4_409 0.79 +0.0
478,587 + Pf1N1B4_409 0.79 +1.0
478,587 + Pf1N1B4_409 0.79 +1.2
478,587 + Pf1N1B4_409 0.79 +1.3
478,588 - Pf1N1B4_409 0.79 +1.0
478,619 - Pf1N1B4_409 0.82 -0.1
478,677 - Pf1N1B4_409 0.88 +0.0
478,792 + +0.3
478,792 + -0.7
478,792 + -2.0
478,792 + -0.6
478,792 + -0.7
478,793 - +1.0
478,793 - +0.9
478,793 - -0.1
478,930 + -0.6
478,931 - -0.1
478,993 + Pf1N1B4_410 0.12 -2.3
478,994 - Pf1N1B4_410 0.12 -1.3
479,008 - Pf1N1B4_410 0.13 -0.7
479,027 + +2.6
479,027 + Pf1N1B4_410 0.15 +0.2
479,027 + Pf1N1B4_410 0.15 +1.0
479,027 + Pf1N1B4_410 0.15 +0.0
479,027 + Pf1N1B4_410 0.15 -0.8
479,027 + Pf1N1B4_410 0.15 +0.0
479,027 + Pf1N1B4_410 0.15 -0.3
479,028 - Pf1N1B4_410 0.15 +0.0
479,028 - Pf1N1B4_410 0.15 +0.6
479,028 - Pf1N1B4_410 0.15 +0.6
479,028 - Pf1N1B4_410 0.15 -0.7
479,028 - Pf1N1B4_410 0.15 +1.0
479,028 - Pf1N1B4_410 0.15 -1.3
479,028 - Pf1N1B4_410 0.15 +0.3
479,028 - Pf1N1B4_410 0.15 -0.6
479,028 - Pf1N1B4_410 0.15 -0.6
479,127 + Pf1N1B4_410 0.21 +0.3
479,127 + Pf1N1B4_410 0.21 -1.3
479,127 + Pf1N1B4_410 0.21 -0.3
479,127 + Pf1N1B4_410 0.21 +1.4
479,127 + Pf1N1B4_410 0.21 -1.4
479,127 + Pf1N1B4_410 0.21 -1.3
479,127 + Pf1N1B4_410 0.21 -1.2
479,127 + Pf1N1B4_410 0.21 +1.3
479,127 + +0.7
479,128 - +1.8
479,128 - Pf1N1B4_410 0.21 +1.4
479,128 - Pf1N1B4_410 0.21 -0.7
479,128 - Pf1N1B4_410 0.21 -0.6
479,128 - +0.0
479,128 - Pf1N1B4_410 0.21 +0.4
479,577 + Pf1N1B4_410 0.50 -0.4
479,578 - Pf1N1B4_410 0.50 +0.3
479,578 - Pf1N1B4_410 0.50 +0.0
479,578 - Pf1N1B4_410 0.50 +1.1
479,578 - Pf1N1B4_410 0.50 -0.3
479,578 - Pf1N1B4_410 0.50 +1.6
479,578 - Pf1N1B4_410 0.50 +0.4
479,578 - Pf1N1B4_410 0.50 -1.3
479,616 - Pf1N1B4_410 0.53 -0.4
479,616 - Pf1N1B4_410 0.53 +2.0
479,693 - Pf1N1B4_410 0.58 -0.1
479,730 + Pf1N1B4_410 0.60 -0.7
479,730 + -0.6
479,731 - +0.0
479,731 - +0.0

Or see this region's nucleotide sequence