Experiment: Dextrin from potato starch 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00695 and HMPREF1058_RS00690 are separated by 173 nucleotides HMPREF1058_RS00690 and HMPREF1058_RS00685 are separated by 80 nucleotides
HMPREF1058_RS00695: HMPREF1058_RS00695 - MFS transporter, at 11,732 to 13,120
_RS00695
HMPREF1058_RS00690: HMPREF1058_RS00690 - DUF3332 domain-containing protein, at 13,294 to 13,845
_RS00690
HMPREF1058_RS00685: HMPREF1058_RS00685 - DUF4934 domain-containing protein, at 13,926 to 15,158
_RS00685
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.294 kb on + strand, within HMPREF1058_RS00695 at 12.383 kb on - strand, within HMPREF1058_RS00695 at 12.392 kb on - strand, within HMPREF1058_RS00695 at 12.457 kb on - strand, within HMPREF1058_RS00695 at 12.461 kb on - strand, within HMPREF1058_RS00695 at 12.476 kb on + strand, within HMPREF1058_RS00695 at 12.487 kb on + strand, within HMPREF1058_RS00695 at 12.500 kb on - strand, within HMPREF1058_RS00695 at 12.529 kb on + strand, within HMPREF1058_RS00695 at 12.726 kb on - strand, within HMPREF1058_RS00695 at 12.727 kb on + strand, within HMPREF1058_RS00695 at 12.728 kb on - strand, within HMPREF1058_RS00695 at 12.728 kb on - strand, within HMPREF1058_RS00695 at 12.797 kb on - strand, within HMPREF1058_RS00695 at 12.800 kb on - strand, within HMPREF1058_RS00695 at 12.805 kb on + strand, within HMPREF1058_RS00695 at 12.805 kb on + strand, within HMPREF1058_RS00695 at 12.806 kb on - strand, within HMPREF1058_RS00695 at 12.905 kb on - strand, within HMPREF1058_RS00695 at 12.946 kb on + strand, within HMPREF1058_RS00695 at 12.957 kb on + strand, within HMPREF1058_RS00695 at 12.958 kb on - strand, within HMPREF1058_RS00695 at 13.014 kb on - strand at 13.275 kb on - strand at 13.500 kb on - strand, within HMPREF1058_RS00690 at 13.582 kb on + strand, within HMPREF1058_RS00690 at 13.611 kb on + strand, within HMPREF1058_RS00690 at 13.612 kb on - strand, within HMPREF1058_RS00690 at 13.612 kb on - strand, within HMPREF1058_RS00690 at 13.671 kb on + strand, within HMPREF1058_RS00690 at 13.809 kb on - strand at 13.919 kb on + strand at 13.920 kb on - strand at 13.922 kb on + strand at 13.923 kb on - strand at 13.923 kb on - strand at 13.961 kb on - strand at 13.964 kb on - strand at 14.079 kb on + strand, within HMPREF1058_RS00685 at 14.125 kb on - strand, within HMPREF1058_RS00685 at 14.163 kb on - strand, within HMPREF1058_RS00685 at 14.206 kb on - strand, within HMPREF1058_RS00685 at 14.321 kb on - strand, within HMPREF1058_RS00685 at 14.339 kb on + strand, within HMPREF1058_RS00685 at 14.356 kb on + strand, within HMPREF1058_RS00685 at 14.357 kb on - strand, within HMPREF1058_RS00685 at 14.362 kb on + strand, within HMPREF1058_RS00685 at 14.462 kb on - strand, within HMPREF1058_RS00685 at 14.466 kb on + strand, within HMPREF1058_RS00685 at 14.546 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.561 kb on - strand, within HMPREF1058_RS00685 at 14.680 kb on + strand, within HMPREF1058_RS00685 at 14.713 kb on - strand, within HMPREF1058_RS00685 at 14.814 kb on + strand, within HMPREF1058_RS00685 at 14.814 kb on + strand, within HMPREF1058_RS00685 at 14.815 kb on - strand, within HMPREF1058_RS00685 at 14.815 kb on - strand, within HMPREF1058_RS00685 at 14.831 kb on + strand, within HMPREF1058_RS00685
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 5 mg/ml (C) remove 12,294 + HMPREF1058_RS00695 0.40 +0.7 12,383 - HMPREF1058_RS00695 0.47 -0.8 12,392 - HMPREF1058_RS00695 0.48 +0.3 12,457 - HMPREF1058_RS00695 0.52 -0.8 12,461 - HMPREF1058_RS00695 0.52 -1.0 12,476 + HMPREF1058_RS00695 0.54 -2.1 12,487 + HMPREF1058_RS00695 0.54 -0.6 12,500 - HMPREF1058_RS00695 0.55 -2.0 12,529 + HMPREF1058_RS00695 0.57 +0.5 12,726 - HMPREF1058_RS00695 0.72 -0.2 12,727 + HMPREF1058_RS00695 0.72 -0.3 12,728 - HMPREF1058_RS00695 0.72 -0.0 12,728 - HMPREF1058_RS00695 0.72 +0.1 12,797 - HMPREF1058_RS00695 0.77 -0.2 12,800 - HMPREF1058_RS00695 0.77 -0.0 12,805 + HMPREF1058_RS00695 0.77 -0.0 12,805 + HMPREF1058_RS00695 0.77 -0.0 12,806 - HMPREF1058_RS00695 0.77 -0.2 12,905 - HMPREF1058_RS00695 0.84 -1.1 12,946 + HMPREF1058_RS00695 0.87 +0.2 12,957 + HMPREF1058_RS00695 0.88 +0.3 12,958 - HMPREF1058_RS00695 0.88 -1.5 13,014 - +0.8 13,275 - -0.1 13,500 - HMPREF1058_RS00690 0.37 +0.0 13,582 + HMPREF1058_RS00690 0.52 -0.5 13,611 + HMPREF1058_RS00690 0.57 -1.0 13,612 - HMPREF1058_RS00690 0.58 -0.4 13,612 - HMPREF1058_RS00690 0.58 -0.4 13,671 + HMPREF1058_RS00690 0.68 +0.1 13,809 - -1.0 13,919 + +0.3 13,920 - +0.2 13,922 + +0.8 13,923 - +0.7 13,923 - -1.4 13,961 - -0.2 13,964 - +2.0 14,079 + HMPREF1058_RS00685 0.12 +0.5 14,125 - HMPREF1058_RS00685 0.16 -0.3 14,163 - HMPREF1058_RS00685 0.19 +0.8 14,206 - HMPREF1058_RS00685 0.23 +1.5 14,321 - HMPREF1058_RS00685 0.32 -0.3 14,339 + HMPREF1058_RS00685 0.33 +1.1 14,356 + HMPREF1058_RS00685 0.35 +0.5 14,357 - HMPREF1058_RS00685 0.35 -0.2 14,362 + HMPREF1058_RS00685 0.35 +1.5 14,462 - HMPREF1058_RS00685 0.43 +0.2 14,466 + HMPREF1058_RS00685 0.44 +0.3 14,546 - HMPREF1058_RS00685 0.50 -0.1 14,561 - HMPREF1058_RS00685 0.52 +0.3 14,561 - HMPREF1058_RS00685 0.52 +0.5 14,561 - HMPREF1058_RS00685 0.52 +0.8 14,680 + HMPREF1058_RS00685 0.61 -0.1 14,713 - HMPREF1058_RS00685 0.64 -0.2 14,814 + HMPREF1058_RS00685 0.72 +0.3 14,814 + HMPREF1058_RS00685 0.72 +0.1 14,815 - HMPREF1058_RS00685 0.72 +0.8 14,815 - HMPREF1058_RS00685 0.72 -0.6 14,831 + HMPREF1058_RS00685 0.73 +0.5
Or see this region's nucleotide sequence