Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00369 and CCNA_03918 are separated by 294 nucleotides CCNA_03918 and CCNA_00370 are separated by 16 nucleotides CCNA_00370 and CCNA_00371 are separated by 10 nucleotides
CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130
_00369
CCNA_03918: CCNA_03918 - hypothetical protein, at 387,425 to 387,559
_03918
CCNA_00370: CCNA_00370 - ATP synthase B chain, at 387,576 to 388,085
_00370
CCNA_00371: CCNA_00371 - ATP synthase B, at 388,096 to 388,629
_00371
Position (kb) 387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.527 kb on + strand, within CCNA_00369 at 386.562 kb on - strand, within CCNA_00369 at 386.608 kb on + strand, within CCNA_00369 at 386.616 kb on - strand, within CCNA_00369 at 386.642 kb on + strand, within CCNA_00369 at 386.689 kb on + strand, within CCNA_00369 at 386.698 kb on - strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.715 kb on - strand, within CCNA_00369 at 386.795 kb on + strand, within CCNA_00369 at 386.804 kb on - strand, within CCNA_00369 at 386.845 kb on - strand, within CCNA_00369 at 386.893 kb on - strand, within CCNA_00369 at 386.907 kb on + strand, within CCNA_00369 at 386.917 kb on + strand, within CCNA_00369 at 386.981 kb on + strand, within CCNA_00369 at 387.022 kb on + strand at 387.081 kb on + strand at 387.090 kb on - strand at 387.095 kb on - strand at 387.116 kb on + strand at 387.116 kb on + strand at 387.116 kb on + strand at 387.124 kb on + strand at 387.133 kb on - strand at 387.149 kb on + strand at 387.155 kb on - strand at 387.159 kb on + strand at 387.205 kb on + strand at 387.205 kb on + strand at 387.213 kb on - strand at 387.278 kb on + strand at 387.278 kb on + strand at 387.294 kb on + strand at 387.302 kb on - strand at 387.307 kb on - strand at 387.310 kb on + strand at 387.318 kb on - strand at 387.326 kb on - strand at 387.417 kb on - strand at 387.417 kb on - strand at 387.417 kb on - strand at 387.437 kb on - strand at 387.490 kb on + strand, within CCNA_03918 at 387.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 386,527 + CCNA_00369 0.54 -1.3 386,562 - CCNA_00369 0.57 +0.9 386,608 + CCNA_00369 0.60 -0.2 386,616 - CCNA_00369 0.61 +0.5 386,642 + CCNA_00369 0.63 +1.1 386,689 + CCNA_00369 0.66 +1.1 386,698 - CCNA_00369 0.67 +2.2 386,707 + CCNA_00369 0.68 -0.1 386,707 + CCNA_00369 0.68 -0.3 386,707 + CCNA_00369 0.68 +2.1 386,707 + CCNA_00369 0.68 +0.3 386,715 - CCNA_00369 0.68 +0.4 386,795 + CCNA_00369 0.74 -1.8 386,804 - CCNA_00369 0.75 +1.0 386,845 - CCNA_00369 0.78 +0.8 386,893 - CCNA_00369 0.82 -1.2 386,907 + CCNA_00369 0.83 -1.2 386,917 + CCNA_00369 0.84 +1.3 386,981 + CCNA_00369 0.89 +0.4 387,022 + -2.7 387,081 + -1.6 387,090 - -0.4 387,095 - -0.2 387,116 + -0.2 387,116 + -1.5 387,116 + -0.6 387,124 + +0.5 387,133 - +0.4 387,149 + -0.3 387,155 - -0.1 387,159 + +0.1 387,205 + -1.2 387,205 + -2.5 387,213 - +1.3 387,278 + +1.0 387,278 + +1.5 387,294 + -3.0 387,302 - -2.2 387,307 - -0.5 387,310 + -0.7 387,318 - +1.3 387,326 - -0.3 387,417 - -1.1 387,417 - +0.3 387,417 - -0.1 387,437 - +0.8 387,490 + CCNA_03918 0.48 -2.7 387,620 + +1.8
Or see this region's nucleotide sequence