Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03704 and CCNA_03705 are separated by 118 nucleotides CCNA_03705 and CCNA_R0089 are separated by 215 nucleotides CCNA_R0089 and CCNA_03706 are separated by 169 nucleotides CCNA_03706 and CCNA_03707 are separated by 85 nucleotides
CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636
_03704
CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225
_03705
CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516
_R0089
CCNA_03706: CCNA_03706 - small heat shock protein, at 3,874,686 to 3,875,114
_03706
CCNA_03707: CCNA_03707 - hypothetical protein, at 3,875,200 to 3,875,469
_03707
Position (kb)
3873
3874
3875 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3873.610 kb on - strand at 3873.616 kb on + strand at 3873.624 kb on - strand at 3873.691 kb on - strand at 3873.736 kb on + strand at 3873.736 kb on + strand at 3873.737 kb on + strand at 3873.737 kb on + strand at 3873.854 kb on + strand, within CCNA_03705 at 3873.864 kb on + strand, within CCNA_03705 at 3873.875 kb on + strand, within CCNA_03705 at 3873.983 kb on + strand, within CCNA_03705 at 3874.013 kb on + strand, within CCNA_03705 at 3874.159 kb on - strand, within CCNA_03705 at 3874.189 kb on + strand at 3874.255 kb on + strand at 3874.265 kb on + strand at 3874.319 kb on + strand at 3874.584 kb on - strand at 3874.584 kb on - strand at 3874.709 kb on - strand at 3874.726 kb on + strand at 3874.734 kb on - strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.738 kb on + strand, within CCNA_03706 at 3874.744 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.746 kb on - strand, within CCNA_03706 at 3874.769 kb on - strand, within CCNA_03706 at 3874.798 kb on - strand, within CCNA_03706 at 3874.825 kb on + strand, within CCNA_03706 at 3874.838 kb on - strand, within CCNA_03706 at 3874.855 kb on - strand, within CCNA_03706 at 3874.855 kb on - strand, within CCNA_03706 at 3874.870 kb on - strand, within CCNA_03706 at 3874.928 kb on + strand, within CCNA_03706 at 3874.946 kb on - strand, within CCNA_03706 at 3874.955 kb on - strand, within CCNA_03706 at 3874.975 kb on + strand, within CCNA_03706 at 3874.975 kb on + strand, within CCNA_03706 at 3874.976 kb on - strand, within CCNA_03706 at 3875.012 kb on + strand, within CCNA_03706 at 3875.013 kb on - strand, within CCNA_03706 at 3875.013 kb on - strand at 3875.034 kb on - strand, within CCNA_03706 at 3875.040 kb on - strand, within CCNA_03706 at 3875.060 kb on - strand, within CCNA_03706 at 3875.060 kb on - strand, within CCNA_03706 at 3875.060 kb on - strand, within CCNA_03706 at 3875.065 kb on - strand, within CCNA_03706 at 3875.119 kb on - strand at 3875.155 kb on - strand at 3875.160 kb on + strand at 3875.215 kb on + strand at 3875.215 kb on + strand at 3875.218 kb on - strand at 3875.218 kb on - strand at 3875.220 kb on - strand at 3875.220 kb on - strand at 3875.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,873,610 - -2.7 3,873,616 + -2.3 3,873,624 - +2.3 3,873,691 - -3.4 3,873,736 + -2.1 3,873,736 + -1.4 3,873,737 + -0.5 3,873,737 + -0.1 3,873,854 + CCNA_03705 0.21 -0.3 3,873,864 + CCNA_03705 0.23 -2.3 3,873,875 + CCNA_03705 0.25 -1.4 3,873,983 + CCNA_03705 0.48 -3.2 3,874,013 + CCNA_03705 0.55 +0.1 3,874,159 - CCNA_03705 0.86 -1.8 3,874,189 + -0.2 3,874,255 + +0.5 3,874,265 + -0.3 3,874,319 + +0.3 3,874,584 - -1.8 3,874,584 - +0.1 3,874,709 - -1.3 3,874,726 + +0.4 3,874,734 - CCNA_03706 0.11 -1.9 3,874,738 + CCNA_03706 0.12 +0.3 3,874,738 + CCNA_03706 0.12 +2.8 3,874,738 + CCNA_03706 0.12 +2.4 3,874,738 + CCNA_03706 0.12 +2.6 3,874,738 + CCNA_03706 0.12 +1.8 3,874,738 + CCNA_03706 0.12 +2.0 3,874,744 - CCNA_03706 0.14 -2.2 3,874,746 - CCNA_03706 0.14 +1.6 3,874,746 - CCNA_03706 0.14 -1.2 3,874,746 - CCNA_03706 0.14 -1.1 3,874,746 - CCNA_03706 0.14 +3.3 3,874,746 - CCNA_03706 0.14 +1.7 3,874,769 - CCNA_03706 0.19 +3.6 3,874,798 - CCNA_03706 0.26 -0.7 3,874,825 + CCNA_03706 0.32 +0.6 3,874,838 - CCNA_03706 0.35 +2.3 3,874,855 - CCNA_03706 0.39 -0.6 3,874,855 - CCNA_03706 0.39 +2.3 3,874,870 - CCNA_03706 0.43 -2.3 3,874,928 + CCNA_03706 0.56 -0.9 3,874,946 - CCNA_03706 0.61 +2.6 3,874,955 - CCNA_03706 0.63 +2.7 3,874,975 + CCNA_03706 0.67 +1.2 3,874,975 + CCNA_03706 0.67 +1.7 3,874,976 - CCNA_03706 0.68 -1.7 3,875,012 + CCNA_03706 0.76 +2.3 3,875,013 - CCNA_03706 0.76 -0.6 3,875,013 - +2.3 3,875,034 - CCNA_03706 0.81 +3.2 3,875,040 - CCNA_03706 0.83 +0.9 3,875,060 - CCNA_03706 0.87 -0.1 3,875,060 - CCNA_03706 0.87 +1.1 3,875,060 - CCNA_03706 0.87 +0.1 3,875,065 - CCNA_03706 0.88 +0.7 3,875,119 - +0.2 3,875,155 - +1.7 3,875,160 + -1.2 3,875,215 + -0.2 3,875,215 + +1.0 3,875,218 - +1.3 3,875,218 - +1.6 3,875,220 - -0.7 3,875,220 - -1.9 3,875,223 - +0.7
Or see this region's nucleotide sequence