Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02626 and CCNA_02627 are separated by 222 nucleotides CCNA_02627 and CCNA_02628 are separated by 218 nucleotides
CCNA_02626: CCNA_02626 - D-alanine--D-alanine ligase, at 2,775,710 to 2,776,684
_02626
CCNA_02627: CCNA_02627 - aminopeptidase, at 2,776,907 to 2,778,310
_02627
CCNA_02628: CCNA_02628 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,778,529 to 2,779,434
_02628
Position (kb)
2776
2777
2778
2779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2776.698 kb on + strand at 2776.715 kb on - strand at 2776.745 kb on + strand at 2776.753 kb on + strand at 2776.769 kb on - strand at 2776.775 kb on - strand at 2776.780 kb on + strand at 2776.801 kb on + strand at 2776.815 kb on + strand at 2776.886 kb on + strand at 2776.886 kb on + strand at 2776.901 kb on - strand at 2776.901 kb on - strand at 2776.945 kb on + strand at 2776.968 kb on + strand at 2776.976 kb on - strand at 2776.982 kb on + strand at 2777.005 kb on - strand at 2777.006 kb on - strand at 2777.022 kb on + strand at 2777.030 kb on - strand at 2777.046 kb on + strand at 2777.054 kb on - strand, within CCNA_02627 at 2777.150 kb on + strand, within CCNA_02627 at 2777.160 kb on + strand, within CCNA_02627 at 2777.160 kb on + strand, within CCNA_02627 at 2777.168 kb on - strand, within CCNA_02627 at 2777.168 kb on - strand, within CCNA_02627 at 2777.168 kb on - strand, within CCNA_02627 at 2777.204 kb on - strand, within CCNA_02627 at 2777.241 kb on + strand, within CCNA_02627 at 2777.241 kb on + strand, within CCNA_02627 at 2777.275 kb on - strand, within CCNA_02627 at 2777.288 kb on + strand, within CCNA_02627 at 2777.294 kb on - strand, within CCNA_02627 at 2777.294 kb on - strand, within CCNA_02627 at 2777.322 kb on + strand, within CCNA_02627 at 2777.349 kb on - strand, within CCNA_02627 at 2777.359 kb on - strand at 2777.385 kb on + strand at 2777.424 kb on + strand, within CCNA_02627 at 2777.467 kb on + strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.475 kb on - strand, within CCNA_02627 at 2777.477 kb on + strand, within CCNA_02627 at 2777.480 kb on - strand, within CCNA_02627 at 2777.485 kb on - strand, within CCNA_02627 at 2777.485 kb on - strand, within CCNA_02627 at 2777.485 kb on - strand, within CCNA_02627 at 2777.523 kb on + strand, within CCNA_02627 at 2777.523 kb on + strand, within CCNA_02627 at 2777.553 kb on + strand, within CCNA_02627 at 2777.571 kb on - strand, within CCNA_02627 at 2777.581 kb on + strand, within CCNA_02627 at 2777.582 kb on - strand, within CCNA_02627 at 2777.605 kb on - strand, within CCNA_02627 at 2777.630 kb on - strand, within CCNA_02627 at 2777.640 kb on - strand, within CCNA_02627 at 2777.669 kb on + strand, within CCNA_02627 at 2777.672 kb on + strand, within CCNA_02627 at 2777.697 kb on + strand, within CCNA_02627 at 2777.705 kb on + strand, within CCNA_02627 at 2777.741 kb on + strand, within CCNA_02627 at 2777.749 kb on - strand, within CCNA_02627 at 2777.810 kb on + strand, within CCNA_02627 at 2777.839 kb on + strand, within CCNA_02627 at 2777.853 kb on - strand, within CCNA_02627 at 2777.862 kb on + strand, within CCNA_02627 at 2777.862 kb on + strand, within CCNA_02627 at 2777.892 kb on + strand, within CCNA_02627 at 2777.892 kb on + strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.910 kb on + strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.918 kb on - strand, within CCNA_02627 at 2777.933 kb on - strand, within CCNA_02627 at 2777.966 kb on + strand, within CCNA_02627 at 2777.974 kb on - strand, within CCNA_02627 at 2777.974 kb on - strand, within CCNA_02627 at 2777.994 kb on - strand, within CCNA_02627 at 2778.008 kb on - strand, within CCNA_02627 at 2778.039 kb on - strand, within CCNA_02627 at 2778.040 kb on - strand, within CCNA_02627 at 2778.042 kb on + strand, within CCNA_02627 at 2778.060 kb on + strand, within CCNA_02627 at 2778.060 kb on + strand, within CCNA_02627 at 2778.068 kb on - strand, within CCNA_02627 at 2778.068 kb on - strand, within CCNA_02627 at 2778.068 kb on - strand, within CCNA_02627 at 2778.077 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.084 kb on + strand, within CCNA_02627 at 2778.092 kb on - strand, within CCNA_02627 at 2778.092 kb on - strand, within CCNA_02627 at 2778.100 kb on - strand, within CCNA_02627 at 2778.102 kb on + strand, within CCNA_02627 at 2778.107 kb on + strand, within CCNA_02627 at 2778.107 kb on + strand, within CCNA_02627 at 2778.114 kb on + strand, within CCNA_02627 at 2778.114 kb on + strand, within CCNA_02627 at 2778.115 kb on - strand, within CCNA_02627 at 2778.122 kb on - strand, within CCNA_02627 at 2778.122 kb on - strand, within CCNA_02627 at 2778.204 kb on + strand at 2778.212 kb on - strand at 2778.228 kb on + strand at 2778.228 kb on + strand at 2778.235 kb on + strand at 2778.236 kb on + strand at 2778.236 kb on - strand at 2778.244 kb on - strand at 2778.259 kb on + strand at 2778.305 kb on + strand at 2778.326 kb on - strand at 2778.403 kb on + strand at 2778.403 kb on + strand at 2778.403 kb on + strand at 2778.406 kb on + strand at 2778.411 kb on - strand at 2778.411 kb on - strand at 2778.430 kb on - strand at 2778.440 kb on - strand at 2778.498 kb on + strand at 2778.500 kb on + strand at 2778.506 kb on - strand at 2778.513 kb on + strand at 2778.518 kb on + strand at 2778.532 kb on - strand at 2778.534 kb on + strand at 2778.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,776,698 + -1.1 2,776,715 - +0.1 2,776,745 + +0.1 2,776,753 + +0.9 2,776,769 - +0.7 2,776,775 - -0.8 2,776,780 + -0.0 2,776,801 + -2.7 2,776,815 + +0.8 2,776,886 + +1.3 2,776,886 + +1.6 2,776,901 - -1.9 2,776,901 - +1.5 2,776,945 + +0.9 2,776,968 + -1.6 2,776,976 - -0.5 2,776,982 + +1.6 2,777,005 - -2.0 2,777,006 - +2.2 2,777,022 + -1.2 2,777,030 - -0.3 2,777,046 + +0.6 2,777,054 - CCNA_02627 0.10 -1.4 2,777,150 + CCNA_02627 0.17 -2.4 2,777,160 + CCNA_02627 0.18 +1.6 2,777,160 + CCNA_02627 0.18 +0.3 2,777,168 - CCNA_02627 0.19 +0.1 2,777,168 - CCNA_02627 0.19 -1.0 2,777,168 - CCNA_02627 0.19 +1.7 2,777,204 - CCNA_02627 0.21 +3.5 2,777,241 + CCNA_02627 0.24 +2.1 2,777,241 + CCNA_02627 0.24 +1.6 2,777,275 - CCNA_02627 0.26 -2.0 2,777,288 + CCNA_02627 0.27 -3.1 2,777,294 - CCNA_02627 0.28 +1.6 2,777,294 - CCNA_02627 0.28 +0.6 2,777,322 + CCNA_02627 0.30 -1.6 2,777,349 - CCNA_02627 0.31 +0.9 2,777,359 - +2.1 2,777,385 + +0.1 2,777,424 + CCNA_02627 0.37 +0.4 2,777,467 + CCNA_02627 0.40 -1.7 2,777,475 - CCNA_02627 0.40 +0.1 2,777,475 - CCNA_02627 0.40 -0.4 2,777,475 - CCNA_02627 0.40 -0.1 2,777,477 + CCNA_02627 0.41 +1.6 2,777,480 - CCNA_02627 0.41 -1.1 2,777,485 - CCNA_02627 0.41 -1.2 2,777,485 - CCNA_02627 0.41 +0.4 2,777,485 - CCNA_02627 0.41 +2.5 2,777,523 + CCNA_02627 0.44 -2.6 2,777,523 + CCNA_02627 0.44 -0.3 2,777,553 + CCNA_02627 0.46 +0.9 2,777,571 - CCNA_02627 0.47 -2.9 2,777,581 + CCNA_02627 0.48 +0.6 2,777,582 - CCNA_02627 0.48 +0.1 2,777,605 - CCNA_02627 0.50 -2.2 2,777,630 - CCNA_02627 0.51 +0.6 2,777,640 - CCNA_02627 0.52 -0.5 2,777,669 + CCNA_02627 0.54 +0.7 2,777,672 + CCNA_02627 0.54 -2.0 2,777,697 + CCNA_02627 0.56 -1.4 2,777,705 + CCNA_02627 0.57 +1.6 2,777,741 + CCNA_02627 0.59 +0.6 2,777,749 - CCNA_02627 0.60 -0.5 2,777,810 + CCNA_02627 0.64 -0.7 2,777,839 + CCNA_02627 0.66 +1.7 2,777,853 - CCNA_02627 0.67 +0.9 2,777,862 + CCNA_02627 0.68 +1.2 2,777,862 + CCNA_02627 0.68 -1.4 2,777,892 + CCNA_02627 0.70 +1.2 2,777,892 + CCNA_02627 0.70 -1.8 2,777,910 + CCNA_02627 0.71 +1.2 2,777,910 + CCNA_02627 0.71 +3.2 2,777,910 + CCNA_02627 0.71 -1.9 2,777,910 + CCNA_02627 0.71 +0.4 2,777,918 - CCNA_02627 0.72 +1.6 2,777,918 - CCNA_02627 0.72 +1.4 2,777,918 - CCNA_02627 0.72 -3.6 2,777,918 - CCNA_02627 0.72 +0.4 2,777,918 - CCNA_02627 0.72 +0.7 2,777,918 - CCNA_02627 0.72 +1.3 2,777,918 - CCNA_02627 0.72 -2.7 2,777,918 - CCNA_02627 0.72 +1.7 2,777,933 - CCNA_02627 0.73 +0.2 2,777,966 + CCNA_02627 0.75 -1.7 2,777,974 - CCNA_02627 0.76 +0.9 2,777,974 - CCNA_02627 0.76 +3.0 2,777,994 - CCNA_02627 0.77 +3.9 2,778,008 - CCNA_02627 0.78 -1.1 2,778,039 - CCNA_02627 0.81 +1.3 2,778,040 - CCNA_02627 0.81 -1.9 2,778,042 + CCNA_02627 0.81 -1.5 2,778,060 + CCNA_02627 0.82 -1.4 2,778,060 + CCNA_02627 0.82 +1.5 2,778,068 - CCNA_02627 0.83 +2.1 2,778,068 - CCNA_02627 0.83 +1.3 2,778,068 - CCNA_02627 0.83 +1.9 2,778,077 + CCNA_02627 0.83 +1.9 2,778,084 + CCNA_02627 0.84 -2.5 2,778,084 + CCNA_02627 0.84 -1.5 2,778,084 + CCNA_02627 0.84 -1.9 2,778,084 + CCNA_02627 0.84 +1.2 2,778,084 + CCNA_02627 0.84 +1.1 2,778,092 - CCNA_02627 0.84 +1.1 2,778,092 - CCNA_02627 0.84 -1.6 2,778,100 - CCNA_02627 0.85 -0.6 2,778,102 + CCNA_02627 0.85 +1.3 2,778,107 + CCNA_02627 0.85 +1.7 2,778,107 + CCNA_02627 0.85 -1.5 2,778,114 + CCNA_02627 0.86 +1.7 2,778,114 + CCNA_02627 0.86 -1.4 2,778,115 - CCNA_02627 0.86 +0.1 2,778,122 - CCNA_02627 0.87 +0.8 2,778,122 - CCNA_02627 0.87 -0.5 2,778,204 + -2.3 2,778,212 - +0.4 2,778,228 + -2.7 2,778,228 + -0.4 2,778,235 + +0.8 2,778,236 + +1.1 2,778,236 - +3.8 2,778,244 - -2.0 2,778,259 + +1.5 2,778,305 + -2.1 2,778,326 - -1.0 2,778,403 + +0.4 2,778,403 + +0.7 2,778,403 + +0.5 2,778,406 + +2.1 2,778,411 - -0.0 2,778,411 - +0.1 2,778,430 - +0.1 2,778,440 - +1.1 2,778,498 + -2.6 2,778,500 + -2.4 2,778,506 - -0.2 2,778,513 + -2.1 2,778,518 + -1.6 2,778,532 - -2.1 2,778,534 + +0.1 2,778,534 - +1.1
Or see this region's nucleotide sequence