Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02246 and CCNA_02247 are separated by 197 nucleotides CCNA_02247 and CCNA_02248 are separated by 1 nucleotides CCNA_02248 and CCNA_02249 are separated by 74 nucleotides CCNA_02249 and CCNA_02250 are separated by 207 nucleotides
CCNA_02246: CCNA_02246 - division plane positioning ATPase MipZ, at 2,395,180 to 2,396,016
_02246
CCNA_02247: CCNA_02247 - pantoate-beta-alanine ligase, at 2,396,214 to 2,397,071
_02247
CCNA_02248: CCNA_02248 - hypothetical protein, at 2,397,073 to 2,397,162
_02248
CCNA_02249: CCNA_02249 - conserved hypothetical cytosolic protein, at 2,397,237 to 2,397,635
_02249
CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807
_02250
Position (kb)
2396
2397
2398 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2395.221 kb on + strand at 2395.226 kb on + strand at 2395.229 kb on - strand at 2395.229 kb on - strand at 2395.229 kb on - strand at 2395.229 kb on - strand at 2395.234 kb on + strand at 2396.026 kb on - strand at 2396.035 kb on - strand at 2396.091 kb on + strand at 2396.091 kb on + strand at 2396.137 kb on - strand at 2396.162 kb on - strand at 2396.179 kb on - strand at 2396.202 kb on - strand at 2397.073 kb on - strand at 2397.073 kb on - strand at 2397.106 kb on + strand, within CCNA_02248 at 2397.191 kb on + strand at 2397.306 kb on - strand, within CCNA_02249 at 2397.311 kb on - strand, within CCNA_02249 at 2397.400 kb on - strand, within CCNA_02249 at 2397.476 kb on - strand, within CCNA_02249 at 2397.512 kb on - strand, within CCNA_02249 at 2397.513 kb on - strand, within CCNA_02249 at 2397.543 kb on + strand, within CCNA_02249 at 2397.584 kb on - strand, within CCNA_02249 at 2397.584 kb on - strand, within CCNA_02249 at 2397.614 kb on + strand at 2397.637 kb on - strand at 2397.646 kb on - strand at 2397.646 kb on - strand at 2397.659 kb on + strand at 2397.697 kb on - strand at 2397.763 kb on + strand at 2397.763 kb on + strand at 2397.771 kb on - strand at 2397.776 kb on - strand at 2397.839 kb on + strand at 2397.841 kb on + strand at 2397.865 kb on - strand at 2397.875 kb on - strand at 2398.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 2,395,221 + +0.1 2,395,226 + -2.3 2,395,229 - -0.4 2,395,229 - -1.1 2,395,229 - -0.1 2,395,229 - +0.1 2,395,234 + +1.7 2,396,026 - -0.8 2,396,035 - -0.1 2,396,091 + -2.1 2,396,091 + -0.4 2,396,137 - +3.1 2,396,162 - -0.7 2,396,179 - +0.4 2,396,202 - -1.6 2,397,073 - +1.1 2,397,073 - -0.6 2,397,106 + CCNA_02248 0.37 -0.8 2,397,191 + +1.5 2,397,306 - CCNA_02249 0.17 +2.1 2,397,311 - CCNA_02249 0.19 -1.6 2,397,400 - CCNA_02249 0.41 +2.1 2,397,476 - CCNA_02249 0.60 +1.8 2,397,512 - CCNA_02249 0.69 +1.3 2,397,513 - CCNA_02249 0.69 -2.0 2,397,543 + CCNA_02249 0.77 +1.3 2,397,584 - CCNA_02249 0.87 -1.7 2,397,584 - CCNA_02249 0.87 -1.9 2,397,614 + +1.6 2,397,637 - -2.1 2,397,646 - -1.1 2,397,646 - +0.5 2,397,659 + -0.4 2,397,697 - -1.1 2,397,763 + +0.8 2,397,763 + -0.1 2,397,771 - -0.3 2,397,776 - +0.7 2,397,839 + -2.3 2,397,841 + +0.3 2,397,865 - +1.8 2,397,875 - +1.7 2,398,020 - +1.0
Or see this region's nucleotide sequence