Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00180 and CCNA_00181 overlap by 4 nucleotides CCNA_00181 and CCNA_00182 overlap by 4 nucleotides CCNA_00182 and CCNA_00183 are separated by 109 nucleotides CCNA_00183 and CCNA_00184 are separated by 58 nucleotides
CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954
_00180
CCNA_00181: CCNA_00181 - type II secretion pathway protein M, at 194,951 to 195,427
_00181
CCNA_00182: CCNA_00182 - type II secretion pathway protein N, at 195,424 to 196,140
_00182
CCNA_00183: CCNA_00183 - type II secretory pathway, prepilin signal peptidase, at 196,250 to 197,011
_00183
CCNA_00184: CCNA_00184 - hypothetical protein, at 197,070 to 197,267
_00184
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 194.456 kb on - strand, within CCNA_00180 at 194.510 kb on - strand, within CCNA_00180 at 194.540 kb on + strand, within CCNA_00180 at 194.546 kb on - strand, within CCNA_00180 at 194.548 kb on - strand, within CCNA_00180 at 194.638 kb on - strand, within CCNA_00180 at 194.640 kb on - strand, within CCNA_00180 at 194.671 kb on + strand, within CCNA_00180 at 194.671 kb on + strand, within CCNA_00180 at 194.677 kb on - strand, within CCNA_00180 at 194.679 kb on - strand, within CCNA_00180 at 194.719 kb on - strand, within CCNA_00180 at 194.752 kb on + strand, within CCNA_00180 at 194.758 kb on + strand, within CCNA_00180 at 194.777 kb on - strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.779 kb on + strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.787 kb on - strand, within CCNA_00180 at 194.847 kb on + strand at 194.869 kb on + strand at 194.875 kb on + strand at 194.883 kb on - strand at 194.907 kb on - strand at 194.918 kb on + strand at 194.948 kb on + strand at 194.949 kb on - strand at 194.956 kb on - strand at 194.962 kb on + strand at 194.962 kb on + strand at 194.962 kb on + strand at 194.962 kb on + strand at 195.048 kb on - strand, within CCNA_00181 at 195.057 kb on + strand, within CCNA_00181 at 195.088 kb on + strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.111 kb on - strand, within CCNA_00181 at 195.130 kb on + strand, within CCNA_00181 at 195.138 kb on - strand, within CCNA_00181 at 195.210 kb on - strand, within CCNA_00181 at 195.273 kb on - strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.310 kb on + strand, within CCNA_00181 at 195.313 kb on - strand, within CCNA_00181 at 195.318 kb on - strand, within CCNA_00181 at 195.331 kb on - strand, within CCNA_00181 at 195.358 kb on - strand, within CCNA_00181 at 195.388 kb on + strand at 195.396 kb on - strand at 195.396 kb on - strand at 195.408 kb on - strand at 195.442 kb on - strand at 195.464 kb on + strand at 195.468 kb on + strand at 195.475 kb on + strand at 195.524 kb on + strand, within CCNA_00182 at 195.524 kb on + strand, within CCNA_00182 at 195.529 kb on - strand, within CCNA_00182 at 195.530 kb on - strand, within CCNA_00182 at 195.547 kb on - strand, within CCNA_00182 at 195.549 kb on - strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.558 kb on + strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.566 kb on - strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.573 kb on + strand, within CCNA_00182 at 195.581 kb on - strand, within CCNA_00182 at 195.631 kb on - strand, within CCNA_00182 at 195.636 kb on + strand, within CCNA_00182 at 195.640 kb on - strand, within CCNA_00182 at 195.654 kb on + strand, within CCNA_00182 at 195.672 kb on - strand, within CCNA_00182 at 195.683 kb on - strand, within CCNA_00182 at 195.696 kb on + strand, within CCNA_00182 at 195.711 kb on - strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.757 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.758 kb on + strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.765 kb on - strand, within CCNA_00182 at 195.825 kb on + strand, within CCNA_00182 at 195.825 kb on + strand, within CCNA_00182 at 195.882 kb on + strand, within CCNA_00182 at 195.892 kb on + strand, within CCNA_00182 at 195.892 kb on + strand, within CCNA_00182 at 195.914 kb on - strand, within CCNA_00182 at 195.916 kb on + strand, within CCNA_00182 at 195.937 kb on - strand, within CCNA_00182 at 195.985 kb on - strand, within CCNA_00182 at 195.985 kb on - strand, within CCNA_00182 at 195.995 kb on - strand, within CCNA_00182 at 195.996 kb on + strand, within CCNA_00182 at 196.004 kb on - strand, within CCNA_00182 at 196.028 kb on - strand, within CCNA_00182 at 196.046 kb on + strand, within CCNA_00182 at 196.051 kb on + strand, within CCNA_00182 at 196.059 kb on - strand, within CCNA_00182 at 196.114 kb on + strand at 196.246 kb on + strand at 196.259 kb on - strand at 196.261 kb on - strand at 196.275 kb on + strand at 196.275 kb on + strand at 196.275 kb on + strand at 196.278 kb on - strand at 196.283 kb on - strand at 196.361 kb on + strand, within CCNA_00183 at 196.361 kb on + strand, within CCNA_00183 at 196.362 kb on - strand, within CCNA_00183 at 196.369 kb on - strand, within CCNA_00183 at 196.369 kb on - strand, within CCNA_00183 at 196.403 kb on + strand, within CCNA_00183 at 196.406 kb on - strand, within CCNA_00183 at 196.406 kb on - strand, within CCNA_00183 at 196.408 kb on + strand, within CCNA_00183 at 196.462 kb on - strand, within CCNA_00183 at 196.478 kb on - strand, within CCNA_00183 at 196.500 kb on + strand, within CCNA_00183 at 196.500 kb on + strand, within CCNA_00183 at 196.500 kb on + strand, within CCNA_00183 at 196.511 kb on - strand, within CCNA_00183 at 196.530 kb on - strand, within CCNA_00183 at 196.553 kb on + strand, within CCNA_00183 at 196.553 kb on + strand, within CCNA_00183 at 196.553 kb on + strand, within CCNA_00183 at 196.576 kb on - strand, within CCNA_00183 at 196.619 kb on + strand, within CCNA_00183 at 196.619 kb on + strand, within CCNA_00183 at 196.632 kb on - strand, within CCNA_00183 at 196.656 kb on + strand, within CCNA_00183 at 196.699 kb on - strand, within CCNA_00183 at 196.772 kb on - strand, within CCNA_00183 at 196.776 kb on + strand, within CCNA_00183 at 196.779 kb on - strand, within CCNA_00183 at 196.784 kb on - strand, within CCNA_00183 at 196.814 kb on - strand, within CCNA_00183 at 196.814 kb on - strand, within CCNA_00183 at 196.833 kb on - strand, within CCNA_00183 at 196.851 kb on + strand, within CCNA_00183 at 196.868 kb on - strand, within CCNA_00183 at 196.901 kb on - strand, within CCNA_00183 at 196.913 kb on - strand, within CCNA_00183 at 196.989 kb on + strand at 196.989 kb on + strand at 196.997 kb on - strand at 196.997 kb on - strand at 196.997 kb on - strand at 196.997 kb on - strand at 196.997 kb on - strand at 197.014 kb on - strand at 197.015 kb on - strand at 197.017 kb on + strand at 197.027 kb on + strand at 197.027 kb on + strand at 197.035 kb on - strand at 197.043 kb on + strand at 197.043 kb on + strand at 197.051 kb on - strand at 197.051 kb on - strand at 197.099 kb on + strand, within CCNA_00184 at 197.119 kb on - strand, within CCNA_00184 at 197.121 kb on + strand, within CCNA_00184 at 197.129 kb on - strand, within CCNA_00184
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 194,456 - CCNA_00180 0.55 +3.8 194,510 - CCNA_00180 0.60 -2.1 194,540 + CCNA_00180 0.63 -1.8 194,546 - CCNA_00180 0.63 -0.7 194,548 - CCNA_00180 0.63 -1.1 194,638 - CCNA_00180 0.71 +1.4 194,640 - CCNA_00180 0.72 +2.5 194,671 + CCNA_00180 0.74 -0.1 194,671 + CCNA_00180 0.74 -1.9 194,677 - CCNA_00180 0.75 +2.0 194,679 - CCNA_00180 0.75 -0.4 194,719 - CCNA_00180 0.79 +2.3 194,752 + CCNA_00180 0.82 -1.4 194,758 + CCNA_00180 0.82 +2.1 194,777 - CCNA_00180 0.84 +0.6 194,779 + CCNA_00180 0.84 -0.4 194,779 + CCNA_00180 0.84 -1.2 194,779 + CCNA_00180 0.84 +1.0 194,787 - CCNA_00180 0.85 -0.1 194,787 - CCNA_00180 0.85 -1.2 194,787 - CCNA_00180 0.85 +1.6 194,847 + -0.9 194,869 + +2.0 194,875 + +0.9 194,883 - -2.7 194,907 - +1.2 194,918 + -0.5 194,948 + -2.6 194,949 - -1.8 194,956 - +2.1 194,962 + -3.7 194,962 + +0.1 194,962 + +1.0 194,962 + +0.8 195,048 - CCNA_00181 0.20 +1.4 195,057 + CCNA_00181 0.22 +1.2 195,088 + CCNA_00181 0.29 +1.5 195,111 - CCNA_00181 0.34 +0.2 195,111 - CCNA_00181 0.34 +1.1 195,111 - CCNA_00181 0.34 +1.1 195,130 + CCNA_00181 0.38 +0.6 195,138 - CCNA_00181 0.39 +1.4 195,210 - CCNA_00181 0.54 +1.6 195,273 - CCNA_00181 0.68 -0.0 195,310 + CCNA_00181 0.75 -0.1 195,310 + CCNA_00181 0.75 +0.3 195,310 + CCNA_00181 0.75 -0.5 195,310 + CCNA_00181 0.75 +0.7 195,313 - CCNA_00181 0.76 +0.3 195,318 - CCNA_00181 0.77 +0.9 195,331 - CCNA_00181 0.80 -1.1 195,358 - CCNA_00181 0.85 +1.0 195,388 + -0.6 195,396 - +2.3 195,396 - +0.7 195,408 - -1.8 195,442 - +2.1 195,464 + +0.5 195,468 + +1.6 195,475 + -1.9 195,524 + CCNA_00182 0.14 +1.5 195,524 + CCNA_00182 0.14 -0.2 195,529 - CCNA_00182 0.15 +1.1 195,530 - CCNA_00182 0.15 -2.7 195,547 - CCNA_00182 0.17 +0.7 195,549 - CCNA_00182 0.17 -0.6 195,558 + CCNA_00182 0.19 +1.7 195,558 + CCNA_00182 0.19 -0.7 195,558 + CCNA_00182 0.19 +3.0 195,558 + CCNA_00182 0.19 -0.5 195,558 + CCNA_00182 0.19 +0.7 195,558 + CCNA_00182 0.19 +2.1 195,558 + CCNA_00182 0.19 +1.3 195,558 + CCNA_00182 0.19 +1.5 195,566 - CCNA_00182 0.20 +0.4 195,566 - CCNA_00182 0.20 +1.9 195,566 - CCNA_00182 0.20 -1.6 195,566 - CCNA_00182 0.20 +1.7 195,573 + CCNA_00182 0.21 +1.5 195,573 + CCNA_00182 0.21 +2.1 195,573 + CCNA_00182 0.21 -1.5 195,581 - CCNA_00182 0.22 -1.8 195,631 - CCNA_00182 0.29 -2.0 195,636 + CCNA_00182 0.30 +1.7 195,640 - CCNA_00182 0.30 -1.2 195,654 + CCNA_00182 0.32 +1.6 195,672 - CCNA_00182 0.35 +1.6 195,683 - CCNA_00182 0.36 +0.2 195,696 + CCNA_00182 0.38 -0.4 195,711 - CCNA_00182 0.40 -1.0 195,757 + CCNA_00182 0.46 +1.9 195,757 + CCNA_00182 0.46 +1.4 195,757 + CCNA_00182 0.46 -0.2 195,758 + CCNA_00182 0.47 +1.9 195,758 + CCNA_00182 0.47 -0.5 195,758 + CCNA_00182 0.47 +1.5 195,758 + CCNA_00182 0.47 +1.5 195,765 - CCNA_00182 0.48 -0.7 195,765 - CCNA_00182 0.48 -1.9 195,765 - CCNA_00182 0.48 -2.2 195,765 - CCNA_00182 0.48 -2.3 195,765 - CCNA_00182 0.48 -0.5 195,765 - CCNA_00182 0.48 +1.4 195,765 - CCNA_00182 0.48 +0.8 195,825 + CCNA_00182 0.56 -2.0 195,825 + CCNA_00182 0.56 +1.3 195,882 + CCNA_00182 0.64 -2.4 195,892 + CCNA_00182 0.65 +1.2 195,892 + CCNA_00182 0.65 +0.7 195,914 - CCNA_00182 0.68 +3.4 195,916 + CCNA_00182 0.69 +1.5 195,937 - CCNA_00182 0.72 +1.8 195,985 - CCNA_00182 0.78 +1.7 195,985 - CCNA_00182 0.78 +0.5 195,995 - CCNA_00182 0.80 +1.5 195,996 + CCNA_00182 0.80 -1.3 196,004 - CCNA_00182 0.81 +0.8 196,028 - CCNA_00182 0.84 +1.2 196,046 + CCNA_00182 0.87 +0.8 196,051 + CCNA_00182 0.87 -0.5 196,059 - CCNA_00182 0.89 +2.6 196,114 + +0.2 196,246 + -0.0 196,259 - +2.1 196,261 - -2.9 196,275 + +1.2 196,275 + -1.3 196,275 + -0.9 196,278 - +1.1 196,283 - +2.5 196,361 + CCNA_00183 0.15 -2.3 196,361 + CCNA_00183 0.15 +2.6 196,362 - CCNA_00183 0.15 +2.3 196,369 - CCNA_00183 0.16 -2.2 196,369 - CCNA_00183 0.16 -0.4 196,403 + CCNA_00183 0.20 -1.9 196,406 - CCNA_00183 0.20 -2.5 196,406 - CCNA_00183 0.20 -3.0 196,408 + CCNA_00183 0.21 +0.7 196,462 - CCNA_00183 0.28 +2.3 196,478 - CCNA_00183 0.30 +2.3 196,500 + CCNA_00183 0.33 -1.9 196,500 + CCNA_00183 0.33 +1.2 196,500 + CCNA_00183 0.33 -0.9 196,511 - CCNA_00183 0.34 +1.8 196,530 - CCNA_00183 0.37 -0.5 196,553 + CCNA_00183 0.40 +2.5 196,553 + CCNA_00183 0.40 -0.8 196,553 + CCNA_00183 0.40 +2.0 196,576 - CCNA_00183 0.43 +1.5 196,619 + CCNA_00183 0.48 -1.7 196,619 + CCNA_00183 0.48 -0.7 196,632 - CCNA_00183 0.50 +4.1 196,656 + CCNA_00183 0.53 -1.5 196,699 - CCNA_00183 0.59 -1.4 196,772 - CCNA_00183 0.69 +1.6 196,776 + CCNA_00183 0.69 -2.4 196,779 - CCNA_00183 0.69 -2.2 196,784 - CCNA_00183 0.70 -2.5 196,814 - CCNA_00183 0.74 +1.0 196,814 - CCNA_00183 0.74 -1.2 196,833 - CCNA_00183 0.77 -1.5 196,851 + CCNA_00183 0.79 -0.9 196,868 - CCNA_00183 0.81 -1.9 196,901 - CCNA_00183 0.85 -2.1 196,913 - CCNA_00183 0.87 +1.4 196,989 + +0.3 196,989 + -1.6 196,997 - -0.2 196,997 - +0.7 196,997 - +1.6 196,997 - +0.2 196,997 - -0.7 197,014 - +0.7 197,015 - +2.2 197,017 + +0.8 197,027 + +0.2 197,027 + -0.0 197,035 - +0.9 197,043 + +2.5 197,043 + -1.8 197,051 - -0.4 197,051 - -2.9 197,099 + CCNA_00184 0.15 -1.5 197,119 - CCNA_00184 0.25 -2.8 197,121 + CCNA_00184 0.26 -2.2 197,129 - CCNA_00184 0.30 +0.9
Or see this region's nucleotide sequence