Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00035

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00033 and CCNA_00034 are separated by 248 nucleotidesCCNA_00034 and CCNA_00035 are separated by 14 nucleotidesCCNA_00035 and CCNA_00036 are separated by 2 nucleotidesCCNA_00036 and CCNA_00037 are separated by 100 nucleotides CCNA_00033: CCNA_00033 - polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase, at 35,824 to 37,962 _00033 CCNA_00034: CCNA_00034 - SSU ribosomal protein S15P, at 38,211 to 38,480 _00034 CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427 _00035 CCNA_00036: CCNA_00036 - ribosome-binding factor A, at 39,430 to 39,879 _00036 CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.012 kb on - strandat 38.036 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.050 kb on - strandat 38.064 kb on + strandat 38.064 kb on + strandat 38.072 kb on - strandat 38.072 kb on - strandat 38.080 kb on + strandat 38.080 kb on + strandat 38.080 kb on + strandat 38.088 kb on - strandat 38.088 kb on - strandat 38.125 kb on + strandat 38.815 kb on + strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.823 kb on - strand, within CCNA_00035at 38.867 kb on - strand, within CCNA_00035at 38.870 kb on + strand, within CCNA_00035at 38.871 kb on + strand, within CCNA_00035at 38.890 kb on + strand, within CCNA_00035at 38.916 kb on - strand, within CCNA_00035at 38.942 kb on - strand, within CCNA_00035at 38.949 kb on + strand, within CCNA_00035at 38.953 kb on - strand, within CCNA_00035at 38.975 kb on - strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.024 kb on - strand, within CCNA_00035at 39.048 kb on + strand, within CCNA_00035at 39.120 kb on - strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.190 kb on - strand, within CCNA_00035at 39.236 kb on + strand, within CCNA_00035at 39.245 kb on - strand, within CCNA_00035at 39.268 kb on + strand, within CCNA_00035at 39.273 kb on + strand, within CCNA_00035at 39.281 kb on - strand, within CCNA_00035at 39.348 kb on + strandat 39.351 kb on - strandat 39.359 kb on + strandat 39.362 kb on - strandat 39.372 kb on - strandat 39.372 kb on - strandat 39.380 kb on - strandat 39.385 kb on - strandat 39.392 kb on + strandat 39.428 kb on + strandat 39.429 kb on - strandat 39.433 kb on + strandat 39.433 kb on + strandat 39.436 kb on - strandat 39.464 kb on - strandat 39.464 kb on - strandat 39.480 kb on + strand, within CCNA_00036at 39.483 kb on - strand, within CCNA_00036at 39.741 kb on - strand, within CCNA_00036at 39.883 kb on + strandat 39.950 kb on + strandat 39.956 kb on - strandat 39.956 kb on - strandat 39.978 kb on + strandat 39.978 kb on + strandat 39.986 kb on - strandat 39.986 kb on - strandat 39.993 kb on - strandat 40.027 kb on + strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.056 kb on - strandat 40.063 kb on + strand, within CCNA_00037at 40.070 kb on + strand, within CCNA_00037at 40.071 kb on - strand, within CCNA_00037at 40.075 kb on + strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.088 kb on - strand, within CCNA_00037at 40.134 kb on + strand, within CCNA_00037at 40.134 kb on - strand, within CCNA_00037at 40.141 kb on - strand, within CCNA_00037at 40.142 kb on - strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.166 kb on - strandat 40.166 kb on - strand, within CCNA_00037at 40.168 kb on - strand, within CCNA_00037at 40.236 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.296 kb on + strand, within CCNA_00037at 40.338 kb on + strand, within CCNA_00037at 40.343 kb on + strand, within CCNA_00037at 40.363 kb on + strand, within CCNA_00037at 40.405 kb on - strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
38,012 - -1.3
38,036 - -2.2
38,050 - -0.3
38,050 - -0.1
38,050 - +0.5
38,050 - -0.5
38,050 - -1.5
38,064 + -2.5
38,064 + -1.3
38,072 - -1.7
38,072 - -0.6
38,080 + -0.2
38,080 + +0.9
38,080 + -0.0
38,088 - -1.9
38,088 - -0.9
38,125 + -2.0
38,815 + CCNA_00035 0.34 -0.7
38,823 - CCNA_00035 0.35 -0.7
38,823 - CCNA_00035 0.35 -1.2
38,867 - CCNA_00035 0.40 -1.6
38,870 + CCNA_00035 0.40 -1.8
38,871 + CCNA_00035 0.40 -0.8
38,890 + CCNA_00035 0.42 -2.2
38,916 - CCNA_00035 0.45 -3.0
38,942 - CCNA_00035 0.48 -2.5
38,949 + CCNA_00035 0.49 -1.0
38,953 - CCNA_00035 0.49 -3.1
38,975 - CCNA_00035 0.51 -2.1
39,016 + CCNA_00035 0.56 +0.0
39,016 + CCNA_00035 0.56 -2.2
39,024 - CCNA_00035 0.57 -0.6
39,048 + CCNA_00035 0.59 -0.8
39,120 - CCNA_00035 0.67 -2.3
39,130 + CCNA_00035 0.68 -2.6
39,130 + CCNA_00035 0.68 -3.0
39,130 + CCNA_00035 0.68 -2.8
39,130 + CCNA_00035 0.68 -1.7
39,130 + CCNA_00035 0.68 -3.6
39,138 - CCNA_00035 0.69 -1.8
39,138 - CCNA_00035 0.69 -2.0
39,138 - CCNA_00035 0.69 -3.1
39,138 - CCNA_00035 0.69 -2.4
39,138 - CCNA_00035 0.69 -1.2
39,138 - CCNA_00035 0.69 -2.0
39,190 - CCNA_00035 0.74 -2.3
39,236 + CCNA_00035 0.79 -3.2
39,245 - CCNA_00035 0.80 -2.6
39,268 + CCNA_00035 0.83 -2.1
39,273 + CCNA_00035 0.83 -2.6
39,281 - CCNA_00035 0.84 -0.9
39,348 + +0.6
39,351 - -3.3
39,359 + -1.5
39,362 - -1.9
39,372 - -1.2
39,372 - -2.5
39,380 - -3.0
39,385 - -3.7
39,392 + -0.7
39,428 + +0.6
39,429 - -1.2
39,433 + -1.5
39,433 + -2.7
39,436 - -2.5
39,464 - -0.5
39,464 - -1.8
39,480 + CCNA_00036 0.11 -2.3
39,483 - CCNA_00036 0.12 -1.5
39,741 - CCNA_00036 0.69 -2.1
39,883 + -2.8
39,950 + -0.7
39,956 - -0.3
39,956 - -0.7
39,978 + -2.4
39,978 + +0.2
39,986 - -1.0
39,986 - +1.8
39,993 - +2.3
40,027 + +0.9
40,035 - +1.0
40,035 - -2.4
40,035 - +0.4
40,043 + +0.0
40,043 + -1.6
40,043 + +1.2
40,051 - -1.5
40,051 - -1.6
40,051 - -0.8
40,056 - +0.0
40,063 + CCNA_00037 0.11 -3.2
40,070 + CCNA_00037 0.11 +0.6
40,071 - CCNA_00037 0.12 -0.7
40,075 + CCNA_00037 0.12 -1.1
40,078 - CCNA_00037 0.12 -1.0
40,078 - CCNA_00037 0.12 -0.2
40,088 - CCNA_00037 0.14 +1.1
40,134 + CCNA_00037 0.20 +0.8
40,134 - CCNA_00037 0.20 +0.3
40,141 - CCNA_00037 0.20 +0.7
40,142 - CCNA_00037 0.21 -1.1
40,158 + CCNA_00037 0.23 -1.4
40,158 + CCNA_00037 0.23 -1.3
40,158 + CCNA_00037 0.23 -1.8
40,166 - +3.6
40,166 - CCNA_00037 0.24 +0.8
40,168 - CCNA_00037 0.24 -0.2
40,236 + CCNA_00037 0.32 -2.7
40,280 + CCNA_00037 0.38 -2.3
40,280 + CCNA_00037 0.38 +0.5
40,288 - CCNA_00037 0.39 -1.1
40,288 - CCNA_00037 0.39 +0.8
40,288 - CCNA_00037 0.39 +0.9
40,288 - CCNA_00037 0.39 +1.1
40,288 - CCNA_00037 0.39 -0.7
40,296 + CCNA_00037 0.40 +0.0
40,338 + CCNA_00037 0.45 -2.5
40,343 + CCNA_00037 0.46 -3.0
40,363 + CCNA_00037 0.49 +0.5
40,405 - CCNA_00037 0.54 -1.7
40,422 + CCNA_00037 0.56 +0.9
40,422 + CCNA_00037 0.56 +0.1

Or see this region's nucleotide sequence