Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26185

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26175 and BPHYT_RS26180 are separated by 20 nucleotidesBPHYT_RS26180 and BPHYT_RS26185 are separated by 11 nucleotidesBPHYT_RS26185 and BPHYT_RS26190 are separated by 11 nucleotidesBPHYT_RS26190 and BPHYT_RS26195 are separated by 152 nucleotides BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949 _RS26175 BPHYT_RS26180: BPHYT_RS26180 - acetyltransferase, at 1,446,970 to 1,447,506 _RS26180 BPHYT_RS26185: BPHYT_RS26185 - thioesterase, at 1,447,518 to 1,447,913 _RS26185 BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557 _RS26190 BPHYT_RS26195: BPHYT_RS26195 - transporter, at 1,448,710 to 1,448,970 _RS26195 Position (kb) 1447 1448Strain fitness (log2 ratio) -1 0 1at 1446.761 kb on + strand, within BPHYT_RS26175at 1447.492 kb on + strandat 1447.493 kb on - strandat 1447.502 kb on + strandat 1447.503 kb on - strandat 1447.503 kb on - strandat 1447.672 kb on + strand, within BPHYT_RS26185at 1448.166 kb on + strand, within BPHYT_RS26190at 1448.167 kb on - strand, within BPHYT_RS26190at 1448.301 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190at 1448.600 kb on - strandat 1448.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,446,761 + BPHYT_RS26175 0.67 +1.7
1,447,492 + -0.2
1,447,493 - -0.7
1,447,502 + -0.0
1,447,503 - -0.6
1,447,503 - -1.3
1,447,672 + BPHYT_RS26185 0.39 -1.0
1,448,166 + BPHYT_RS26190 0.38 -0.3
1,448,167 - BPHYT_RS26190 0.38 -0.3
1,448,301 + BPHYT_RS26190 0.59 -0.2
1,448,478 + BPHYT_RS26190 0.87 -0.1
1,448,478 + BPHYT_RS26190 0.87 -1.5
1,448,600 - +0.3
1,448,686 - -0.1

Or see this region's nucleotide sequence