Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22820 and AO356_22825 are separated by 108 nucleotides AO356_22825 and AO356_22830 are separated by 224 nucleotides AO356_22830 and AO356_22835 are separated by 231 nucleotides
AO356_22820: AO356_22820 - hypothetical protein, at 5,092,538 to 5,093,074
_22820
AO356_22825: AO356_22825 - transcriptional regulator, at 5,093,183 to 5,093,548
_22825
AO356_22830: AO356_22830 - diguanylate phosphodiesterase, at 5,093,773 to 5,095,317
_22830
AO356_22835: AO356_22835 - LysR family transcriptional regulator, at 5,095,549 to 5,096,412
_22835
Position (kb) 5093
5094
5095
5096 Strain fitness (log2 ratio) -2
-1
0
1 at 5092.801 kb on - strand, within AO356_22820 at 5092.801 kb on - strand, within AO356_22820 at 5092.801 kb on - strand, within AO356_22820 at 5092.807 kb on - strand, within AO356_22820 at 5092.860 kb on + strand, within AO356_22820 at 5092.860 kb on + strand, within AO356_22820 at 5092.860 kb on + strand, within AO356_22820 at 5092.860 kb on + strand, within AO356_22820 at 5092.861 kb on - strand, within AO356_22820 at 5092.861 kb on - strand, within AO356_22820 at 5092.861 kb on - strand, within AO356_22820 at 5092.867 kb on + strand, within AO356_22820 at 5092.867 kb on + strand, within AO356_22820 at 5092.867 kb on + strand, within AO356_22820 at 5092.868 kb on - strand, within AO356_22820 at 5092.868 kb on - strand, within AO356_22820 at 5092.896 kb on + strand, within AO356_22820 at 5092.896 kb on + strand, within AO356_22820 at 5092.896 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.944 kb on + strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.945 kb on - strand, within AO356_22820 at 5092.971 kb on + strand, within AO356_22820 at 5092.972 kb on - strand, within AO356_22820 at 5092.988 kb on + strand, within AO356_22820 at 5092.988 kb on + strand, within AO356_22820 at 5092.988 kb on + strand, within AO356_22820 at 5092.988 kb on + strand, within AO356_22820 at 5092.988 kb on + strand, within AO356_22820 at 5092.989 kb on - strand, within AO356_22820 at 5092.989 kb on - strand, within AO356_22820 at 5092.989 kb on - strand, within AO356_22820 at 5092.989 kb on - strand, within AO356_22820 at 5093.000 kb on + strand, within AO356_22820 at 5093.001 kb on - strand, within AO356_22820 at 5093.043 kb on + strand at 5093.043 kb on + strand at 5093.044 kb on - strand at 5093.070 kb on + strand at 5093.071 kb on - strand at 5093.071 kb on - strand at 5093.086 kb on + strand at 5093.087 kb on - strand at 5093.087 kb on - strand at 5093.089 kb on + strand at 5093.103 kb on + strand at 5093.104 kb on - strand at 5093.109 kb on + strand at 5093.123 kb on + strand at 5093.220 kb on + strand, within AO356_22825 at 5093.410 kb on - strand, within AO356_22825 at 5093.556 kb on - strand at 5093.580 kb on + strand at 5093.599 kb on + strand at 5093.599 kb on + strand at 5093.600 kb on - strand at 5093.601 kb on + strand at 5093.602 kb on - strand at 5093.632 kb on - strand at 5093.672 kb on + strand at 5093.716 kb on + strand at 5093.716 kb on + strand at 5093.735 kb on + strand at 5093.759 kb on + strand at 5093.759 kb on + strand at 5093.774 kb on + strand at 5093.774 kb on + strand at 5093.775 kb on - strand at 5093.775 kb on - strand at 5093.775 kb on - strand at 5093.836 kb on + strand at 5093.836 kb on + strand at 5093.836 kb on + strand at 5093.837 kb on - strand at 5093.837 kb on - strand at 5093.840 kb on + strand at 5093.840 kb on + strand at 5093.840 kb on + strand at 5093.841 kb on - strand at 5093.841 kb on - strand at 5093.848 kb on + strand at 5093.849 kb on - strand at 5093.877 kb on - strand at 5093.916 kb on + strand at 5094.044 kb on + strand, within AO356_22830 at 5094.044 kb on + strand, within AO356_22830 at 5094.044 kb on + strand, within AO356_22830 at 5094.045 kb on - strand, within AO356_22830 at 5094.045 kb on - strand, within AO356_22830 at 5094.172 kb on + strand, within AO356_22830 at 5094.172 kb on + strand, within AO356_22830 at 5094.173 kb on - strand, within AO356_22830 at 5094.621 kb on - strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.635 kb on + strand, within AO356_22830 at 5094.636 kb on - strand, within AO356_22830 at 5094.636 kb on - strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.670 kb on + strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.671 kb on - strand, within AO356_22830 at 5094.881 kb on + strand, within AO356_22830 at 5094.948 kb on - strand, within AO356_22830 at 5094.998 kb on + strand, within AO356_22830 at 5094.998 kb on + strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5094.999 kb on - strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.108 kb on + strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.109 kb on - strand, within AO356_22830 at 5095.217 kb on + strand at 5095.275 kb on - strand at 5095.335 kb on - strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.372 kb on + strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand at 5095.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,092,801 - AO356_22820 0.49 +1.2 5,092,801 - AO356_22820 0.49 +0.3 5,092,801 - AO356_22820 0.49 -0.5 5,092,807 - AO356_22820 0.50 -0.2 5,092,860 + AO356_22820 0.60 +0.6 5,092,860 + AO356_22820 0.60 +0.9 5,092,860 + AO356_22820 0.60 +0.5 5,092,860 + AO356_22820 0.60 +0.4 5,092,861 - AO356_22820 0.60 +0.1 5,092,861 - AO356_22820 0.60 -0.4 5,092,861 - AO356_22820 0.60 -0.1 5,092,867 + AO356_22820 0.61 +1.2 5,092,867 + AO356_22820 0.61 -0.2 5,092,867 + AO356_22820 0.61 -0.9 5,092,868 - AO356_22820 0.61 +0.4 5,092,868 - AO356_22820 0.61 -1.3 5,092,896 + AO356_22820 0.67 +0.1 5,092,896 + AO356_22820 0.67 -0.3 5,092,896 + AO356_22820 0.67 +0.4 5,092,944 + AO356_22820 0.76 -0.3 5,092,944 + AO356_22820 0.76 +0.2 5,092,944 + AO356_22820 0.76 -1.5 5,092,944 + AO356_22820 0.76 -0.3 5,092,944 + AO356_22820 0.76 -0.9 5,092,944 + AO356_22820 0.76 -0.3 5,092,944 + AO356_22820 0.76 -0.3 5,092,944 + AO356_22820 0.76 +0.5 5,092,944 + AO356_22820 0.76 +0.6 5,092,944 + AO356_22820 0.76 -0.3 5,092,944 + AO356_22820 0.76 -0.1 5,092,945 - AO356_22820 0.76 +0.6 5,092,945 - AO356_22820 0.76 -0.3 5,092,945 - AO356_22820 0.76 -0.1 5,092,945 - AO356_22820 0.76 +0.2 5,092,945 - AO356_22820 0.76 -0.6 5,092,945 - AO356_22820 0.76 +0.7 5,092,945 - AO356_22820 0.76 +0.5 5,092,945 - AO356_22820 0.76 -0.6 5,092,971 + AO356_22820 0.81 -0.3 5,092,972 - AO356_22820 0.81 -0.0 5,092,988 + AO356_22820 0.84 +0.4 5,092,988 + AO356_22820 0.84 +0.2 5,092,988 + AO356_22820 0.84 +0.4 5,092,988 + AO356_22820 0.84 -0.7 5,092,988 + AO356_22820 0.84 +0.8 5,092,989 - AO356_22820 0.84 -0.7 5,092,989 - AO356_22820 0.84 -0.1 5,092,989 - AO356_22820 0.84 -0.0 5,092,989 - AO356_22820 0.84 -0.1 5,093,000 + AO356_22820 0.86 +0.5 5,093,001 - AO356_22820 0.86 -0.2 5,093,043 + -0.4 5,093,043 + +0.3 5,093,044 - +0.0 5,093,070 + -0.3 5,093,071 - -0.8 5,093,071 - +0.1 5,093,086 + -0.4 5,093,087 - +0.0 5,093,087 - -0.8 5,093,089 + -0.6 5,093,103 + -0.1 5,093,104 - -1.0 5,093,109 + +0.5 5,093,123 + -1.9 5,093,220 + AO356_22825 0.10 -0.7 5,093,410 - AO356_22825 0.62 -0.7 5,093,556 - -0.0 5,093,580 + -0.9 5,093,599 + -0.0 5,093,599 + -0.8 5,093,600 - -0.4 5,093,601 + -0.8 5,093,602 - +0.4 5,093,632 - +0.5 5,093,672 + -0.1 5,093,716 + -0.1 5,093,716 + -0.4 5,093,735 + -0.4 5,093,759 + -0.3 5,093,759 + -0.1 5,093,774 + +0.0 5,093,774 + +0.6 5,093,775 - -0.3 5,093,775 - -0.0 5,093,775 - +1.6 5,093,836 + -0.3 5,093,836 + -0.2 5,093,836 + -1.9 5,093,837 - +0.1 5,093,837 - +0.1 5,093,840 + +0.2 5,093,840 + +0.5 5,093,840 + +0.1 5,093,841 - +1.2 5,093,841 - -0.5 5,093,848 + +0.3 5,093,849 - +0.6 5,093,877 - -0.1 5,093,916 + +0.9 5,094,044 + AO356_22830 0.18 +0.1 5,094,044 + AO356_22830 0.18 +0.6 5,094,044 + AO356_22830 0.18 +0.1 5,094,045 - AO356_22830 0.18 -0.6 5,094,045 - AO356_22830 0.18 +0.2 5,094,172 + AO356_22830 0.26 -0.7 5,094,172 + AO356_22830 0.26 +0.1 5,094,173 - AO356_22830 0.26 -0.4 5,094,621 - AO356_22830 0.55 +0.4 5,094,635 + AO356_22830 0.56 +1.5 5,094,635 + AO356_22830 0.56 +0.1 5,094,635 + AO356_22830 0.56 +0.0 5,094,636 - AO356_22830 0.56 +0.9 5,094,636 - AO356_22830 0.56 -1.4 5,094,670 + AO356_22830 0.58 +1.4 5,094,670 + AO356_22830 0.58 -0.8 5,094,670 + AO356_22830 0.58 -0.5 5,094,671 - AO356_22830 0.58 +0.6 5,094,671 - AO356_22830 0.58 +0.7 5,094,671 - AO356_22830 0.58 -0.2 5,094,671 - AO356_22830 0.58 +0.0 5,094,881 + AO356_22830 0.72 +0.5 5,094,948 - AO356_22830 0.76 +0.5 5,094,998 + AO356_22830 0.79 +0.7 5,094,998 + AO356_22830 0.79 -0.9 5,094,999 - AO356_22830 0.79 +0.3 5,094,999 - AO356_22830 0.79 -0.2 5,094,999 - AO356_22830 0.79 -2.3 5,095,108 + AO356_22830 0.86 -0.3 5,095,108 + AO356_22830 0.86 -0.9 5,095,108 + AO356_22830 0.86 -0.3 5,095,108 + AO356_22830 0.86 +0.5 5,095,109 - AO356_22830 0.86 +0.3 5,095,109 - AO356_22830 0.86 +0.0 5,095,109 - AO356_22830 0.86 -0.4 5,095,109 - AO356_22830 0.86 -0.0 5,095,109 - AO356_22830 0.86 -1.6 5,095,109 - AO356_22830 0.86 +1.1 5,095,217 + +1.0 5,095,275 - +0.2 5,095,335 - -0.1 5,095,372 + -0.5 5,095,372 + -0.2 5,095,372 + +1.1 5,095,372 + +0.0 5,095,372 + +0.9 5,095,372 + -1.1 5,095,372 + -0.1 5,095,372 + +0.3 5,095,372 + +0.2 5,095,372 + +0.2 5,095,372 + -0.4 5,095,373 - +1.3 5,095,373 - +0.1 5,095,373 - +0.3 5,095,373 - -0.6 5,095,373 - -0.2 5,095,373 - -0.6 5,095,373 - +0.2 5,095,373 - +0.7
Or see this region's nucleotide sequence