Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22320 and AO356_22325 are separated by 267 nucleotides AO356_22325 and AO356_22330 overlap by 17 nucleotides AO356_22330 and AO356_22335 are separated by 7 nucleotides
AO356_22320: AO356_22320 - thioesterase, at 4,992,193 to 4,992,744
_22320
AO356_22325: AO356_22325 - reactive intermediate/imine deaminase, at 4,993,012 to 4,993,392
_22325
AO356_22330: AO356_22330 - hypothetical protein, at 4,993,376 to 4,993,612
_22330
AO356_22335: AO356_22335 - LysR family transcriptional regulator, at 4,993,620 to 4,994,573
_22335
Position (kb) 4993
4994 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4992.569 kb on + strand, within AO356_22320 at 4992.569 kb on + strand, within AO356_22320 at 4992.569 kb on + strand, within AO356_22320 at 4992.570 kb on - strand, within AO356_22320 at 4992.570 kb on - strand, within AO356_22320 at 4992.570 kb on - strand, within AO356_22320 at 4992.602 kb on + strand, within AO356_22320 at 4992.602 kb on + strand, within AO356_22320 at 4992.602 kb on + strand, within AO356_22320 at 4992.779 kb on + strand at 4992.779 kb on + strand at 4992.779 kb on + strand at 4992.802 kb on + strand at 4992.991 kb on - strand at 4993.121 kb on + strand, within AO356_22325 at 4993.121 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.368 kb on + strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.434 kb on + strand, within AO356_22330 at 4993.434 kb on + strand, within AO356_22330 at 4993.477 kb on - strand, within AO356_22330 at 4993.477 kb on - strand, within AO356_22330 at 4993.619 kb on - strand at 4993.676 kb on - strand at 4993.744 kb on + strand, within AO356_22335 at 4993.744 kb on + strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.814 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.860 kb on + strand, within AO356_22335 at 4993.861 kb on - strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.218 kb on + strand, within AO356_22335 at 4994.461 kb on - strand, within AO356_22335
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 4,992,569 + AO356_22320 0.68 +0.1 4,992,569 + AO356_22320 0.68 +0.3 4,992,569 + AO356_22320 0.68 +0.6 4,992,570 - AO356_22320 0.68 -0.3 4,992,570 - AO356_22320 0.68 -0.3 4,992,570 - AO356_22320 0.68 -0.9 4,992,602 + AO356_22320 0.74 -1.2 4,992,602 + AO356_22320 0.74 +0.4 4,992,602 + AO356_22320 0.74 +0.5 4,992,779 + +0.1 4,992,779 + -0.6 4,992,779 + +0.3 4,992,802 + +1.0 4,992,991 - -0.5 4,993,121 + AO356_22325 0.29 +0.1 4,993,121 + AO356_22325 0.29 +1.3 4,993,163 + AO356_22325 0.40 -0.3 4,993,163 + AO356_22325 0.40 +0.8 4,993,163 + AO356_22325 0.40 +0.9 4,993,164 - AO356_22325 0.40 +0.2 4,993,164 - AO356_22325 0.40 -1.8 4,993,164 - AO356_22325 0.40 +1.4 4,993,164 - AO356_22325 0.40 +1.2 4,993,368 + -0.1 4,993,369 - +1.1 4,993,369 - +0.3 4,993,369 - +1.1 4,993,369 - +0.8 4,993,434 + AO356_22330 0.24 -1.4 4,993,434 + AO356_22330 0.24 -0.7 4,993,477 - AO356_22330 0.43 -0.2 4,993,477 - AO356_22330 0.43 -0.3 4,993,619 - -2.4 4,993,676 - +0.1 4,993,744 + AO356_22335 0.13 +1.6 4,993,744 + AO356_22335 0.13 -1.1 4,993,745 - AO356_22335 0.13 +0.3 4,993,745 - AO356_22335 0.13 +0.3 4,993,814 - AO356_22335 0.20 +0.6 4,993,841 - AO356_22335 0.23 -0.2 4,993,841 - AO356_22335 0.23 -0.2 4,993,841 - AO356_22335 0.23 +0.4 4,993,860 + AO356_22335 0.25 +0.3 4,993,861 - AO356_22335 0.25 +3.2 4,994,053 + AO356_22335 0.45 -0.5 4,994,053 + AO356_22335 0.45 +1.0 4,994,053 + AO356_22335 0.45 -0.1 4,994,054 - AO356_22335 0.45 -0.6 4,994,054 - AO356_22335 0.45 -0.1 4,994,054 - AO356_22335 0.45 +0.4 4,994,054 - AO356_22335 0.45 +1.2 4,994,054 - AO356_22335 0.45 -0.7 4,994,218 + AO356_22335 0.63 -0.2 4,994,461 - AO356_22335 0.88 +1.2
Or see this region's nucleotide sequence