Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16370

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16360 and AO356_16365 overlap by 4 nucleotidesAO356_16365 and AO356_16370 overlap by 14 nucleotidesAO356_16370 and AO356_16375 are separated by 48 nucleotidesAO356_16375 and AO356_16380 overlap by 1 nucleotides AO356_16360: AO356_16360 - hypothetical protein, at 3,698,395 to 3,698,682 _16360 AO356_16365: AO356_16365 - hypothetical protein, at 3,698,679 to 3,699,377 _16365 AO356_16370: AO356_16370 - hypothetical protein, at 3,699,364 to 3,700,089 _16370 AO356_16375: AO356_16375 - hypothetical protein, at 3,700,138 to 3,701,064 _16375 AO356_16380: AO356_16380 - hypothetical protein, at 3,701,064 to 3,701,420 _16380 Position (kb) 3699 3700 3701Strain fitness (log2 ratio) -2 -1 0 1 2at 3698.440 kb on - strand, within AO356_16360at 3698.460 kb on + strand, within AO356_16360at 3698.460 kb on + strand, within AO356_16360at 3698.461 kb on - strand, within AO356_16360at 3698.461 kb on - strand, within AO356_16360at 3698.533 kb on + strand, within AO356_16360at 3698.533 kb on + strand, within AO356_16360at 3698.533 kb on + strand, within AO356_16360at 3698.533 kb on + strand, within AO356_16360at 3698.533 kb on + strand, within AO356_16360at 3698.534 kb on - strand, within AO356_16360at 3698.534 kb on - strand, within AO356_16360at 3698.623 kb on + strand, within AO356_16360at 3698.623 kb on + strand, within AO356_16360at 3698.623 kb on + strand, within AO356_16360at 3698.623 kb on + strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.624 kb on - strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.635 kb on + strand, within AO356_16360at 3698.636 kb on - strand, within AO356_16360at 3698.636 kb on - strand, within AO356_16360at 3698.636 kb on - strand, within AO356_16360at 3698.909 kb on + strand, within AO356_16365at 3698.909 kb on + strand, within AO356_16365at 3698.909 kb on + strand, within AO356_16365at 3698.910 kb on - strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.940 kb on + strand, within AO356_16365at 3698.941 kb on - strand, within AO356_16365at 3698.941 kb on - strand, within AO356_16365at 3698.994 kb on + strand, within AO356_16365at 3698.995 kb on - strand, within AO356_16365at 3698.995 kb on - strand, within AO356_16365at 3699.034 kb on + strand, within AO356_16365at 3699.034 kb on + strand, within AO356_16365at 3699.034 kb on + strand, within AO356_16365at 3699.035 kb on - strand, within AO356_16365at 3699.035 kb on - strand, within AO356_16365at 3699.035 kb on - strand, within AO356_16365at 3699.035 kb on - strand, within AO356_16365at 3699.035 kb on - strand, within AO356_16365at 3699.042 kb on + strand, within AO356_16365at 3699.161 kb on - strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.181 kb on + strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.182 kb on - strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.263 kb on + strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.264 kb on - strand, within AO356_16365at 3699.455 kb on + strand, within AO356_16370at 3699.455 kb on + strand, within AO356_16370at 3699.455 kb on + strand, within AO356_16370at 3699.455 kb on + strand, within AO356_16370at 3699.456 kb on - strand, within AO356_16370at 3699.456 kb on - strand, within AO356_16370at 3699.456 kb on - strand, within AO356_16370at 3699.456 kb on - strand, within AO356_16370at 3699.486 kb on + strand, within AO356_16370at 3699.487 kb on - strand, within AO356_16370at 3699.487 kb on - strand, within AO356_16370at 3699.532 kb on + strand, within AO356_16370at 3699.533 kb on - strand, within AO356_16370at 3699.806 kb on + strand, within AO356_16370at 3699.806 kb on + strand, within AO356_16370at 3699.806 kb on + strand, within AO356_16370at 3699.807 kb on - strand, within AO356_16370at 3699.807 kb on - strand, within AO356_16370at 3699.840 kb on + strand, within AO356_16370at 3699.840 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.878 kb on + strand, within AO356_16370at 3699.879 kb on - strand, within AO356_16370at 3699.879 kb on - strand, within AO356_16370at 3699.879 kb on - strand, within AO356_16370at 3699.879 kb on - strand, within AO356_16370at 3699.893 kb on + strand, within AO356_16370at 3699.894 kb on - strand, within AO356_16370at 3700.279 kb on - strand, within AO356_16375at 3700.337 kb on - strand, within AO356_16375at 3700.620 kb on + strand, within AO356_16375at 3700.620 kb on + strand, within AO356_16375at 3700.621 kb on - strand, within AO356_16375at 3700.621 kb on - strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.870 kb on + strand, within AO356_16375at 3700.871 kb on - strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.951 kb on + strand, within AO356_16375at 3700.952 kb on - strand, within AO356_16375

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,698,440 - AO356_16360 0.16 -0.0
3,698,460 + AO356_16360 0.23 +0.8
3,698,460 + AO356_16360 0.23 -0.1
3,698,461 - AO356_16360 0.23 +0.6
3,698,461 - AO356_16360 0.23 +0.2
3,698,533 + AO356_16360 0.48 -0.4
3,698,533 + AO356_16360 0.48 -0.5
3,698,533 + AO356_16360 0.48 +0.6
3,698,533 + AO356_16360 0.48 +1.2
3,698,533 + AO356_16360 0.48 -1.5
3,698,534 - AO356_16360 0.48 +0.1
3,698,534 - AO356_16360 0.48 -0.7
3,698,623 + AO356_16360 0.79 +0.4
3,698,623 + AO356_16360 0.79 -0.5
3,698,623 + AO356_16360 0.79 -0.5
3,698,623 + AO356_16360 0.79 +0.0
3,698,624 - AO356_16360 0.80 +0.5
3,698,624 - AO356_16360 0.80 +0.5
3,698,624 - AO356_16360 0.80 +1.0
3,698,624 - AO356_16360 0.80 +0.4
3,698,624 - AO356_16360 0.80 +0.2
3,698,624 - AO356_16360 0.80 -0.1
3,698,624 - AO356_16360 0.80 +0.3
3,698,635 + AO356_16360 0.83 +1.6
3,698,635 + AO356_16360 0.83 -0.2
3,698,635 + AO356_16360 0.83 +0.4
3,698,635 + AO356_16360 0.83 -0.0
3,698,635 + AO356_16360 0.83 +0.4
3,698,635 + AO356_16360 0.83 -0.4
3,698,636 - AO356_16360 0.84 -0.1
3,698,636 - AO356_16360 0.84 +0.4
3,698,636 - AO356_16360 0.84 -0.1
3,698,909 + AO356_16365 0.33 +0.3
3,698,909 + AO356_16365 0.33 -0.5
3,698,909 + AO356_16365 0.33 -0.4
3,698,910 - AO356_16365 0.33 +0.6
3,698,940 + AO356_16365 0.37 -0.3
3,698,940 + AO356_16365 0.37 -0.1
3,698,940 + AO356_16365 0.37 -0.4
3,698,940 + AO356_16365 0.37 -0.2
3,698,940 + AO356_16365 0.37 -1.8
3,698,940 + AO356_16365 0.37 -0.9
3,698,940 + AO356_16365 0.37 +0.9
3,698,940 + AO356_16365 0.37 +1.2
3,698,941 - AO356_16365 0.37 +0.6
3,698,941 - AO356_16365 0.37 +1.6
3,698,994 + AO356_16365 0.45 -0.9
3,698,995 - AO356_16365 0.45 -0.1
3,698,995 - AO356_16365 0.45 -0.2
3,699,034 + AO356_16365 0.51 +2.5
3,699,034 + AO356_16365 0.51 +0.6
3,699,034 + AO356_16365 0.51 +0.2
3,699,035 - AO356_16365 0.51 +0.2
3,699,035 - AO356_16365 0.51 +1.8
3,699,035 - AO356_16365 0.51 +0.4
3,699,035 - AO356_16365 0.51 +0.7
3,699,035 - AO356_16365 0.51 -0.3
3,699,042 + AO356_16365 0.52 -0.4
3,699,161 - AO356_16365 0.69 -0.1
3,699,181 + AO356_16365 0.72 +0.3
3,699,181 + AO356_16365 0.72 -1.1
3,699,181 + AO356_16365 0.72 -0.3
3,699,181 + AO356_16365 0.72 -0.5
3,699,181 + AO356_16365 0.72 -0.5
3,699,181 + AO356_16365 0.72 -0.3
3,699,181 + AO356_16365 0.72 -0.2
3,699,181 + AO356_16365 0.72 -0.8
3,699,181 + AO356_16365 0.72 +0.0
3,699,181 + AO356_16365 0.72 +0.5
3,699,181 + AO356_16365 0.72 -0.3
3,699,181 + AO356_16365 0.72 -0.0
3,699,182 - AO356_16365 0.72 -0.4
3,699,182 - AO356_16365 0.72 +0.0
3,699,182 - AO356_16365 0.72 +0.0
3,699,182 - AO356_16365 0.72 -0.2
3,699,182 - AO356_16365 0.72 +0.4
3,699,182 - AO356_16365 0.72 +0.1
3,699,182 - AO356_16365 0.72 +1.2
3,699,182 - AO356_16365 0.72 -0.3
3,699,182 - AO356_16365 0.72 -1.8
3,699,182 - AO356_16365 0.72 +0.0
3,699,182 - AO356_16365 0.72 +0.9
3,699,182 - AO356_16365 0.72 +2.0
3,699,263 + AO356_16365 0.84 -0.2
3,699,263 + AO356_16365 0.84 +0.1
3,699,263 + AO356_16365 0.84 +0.8
3,699,263 + AO356_16365 0.84 -0.2
3,699,263 + AO356_16365 0.84 -0.4
3,699,263 + AO356_16365 0.84 +1.4
3,699,263 + AO356_16365 0.84 -0.4
3,699,263 + AO356_16365 0.84 -0.9
3,699,263 + AO356_16365 0.84 +0.2
3,699,264 - AO356_16365 0.84 +0.4
3,699,264 - AO356_16365 0.84 +1.1
3,699,264 - AO356_16365 0.84 -0.4
3,699,264 - AO356_16365 0.84 +0.5
3,699,264 - AO356_16365 0.84 +0.0
3,699,264 - AO356_16365 0.84 +0.5
3,699,264 - AO356_16365 0.84 +0.2
3,699,455 + AO356_16370 0.13 +0.7
3,699,455 + AO356_16370 0.13 -1.1
3,699,455 + AO356_16370 0.13 +0.1
3,699,455 + AO356_16370 0.13 +0.1
3,699,456 - AO356_16370 0.13 +0.4
3,699,456 - AO356_16370 0.13 +0.6
3,699,456 - AO356_16370 0.13 -1.4
3,699,456 - AO356_16370 0.13 +1.2
3,699,486 + AO356_16370 0.17 +0.0
3,699,487 - AO356_16370 0.17 +0.3
3,699,487 - AO356_16370 0.17 -0.0
3,699,532 + AO356_16370 0.23 -0.2
3,699,533 - AO356_16370 0.23 -0.7
3,699,806 + AO356_16370 0.61 -0.3
3,699,806 + AO356_16370 0.61 -0.1
3,699,806 + AO356_16370 0.61 -0.5
3,699,807 - AO356_16370 0.61 -0.3
3,699,807 - AO356_16370 0.61 -0.8
3,699,840 + AO356_16370 0.66 +0.4
3,699,840 + AO356_16370 0.66 +0.0
3,699,878 + AO356_16370 0.71 -0.5
3,699,878 + AO356_16370 0.71 -0.4
3,699,878 + AO356_16370 0.71 -0.0
3,699,878 + AO356_16370 0.71 -0.9
3,699,878 + AO356_16370 0.71 +0.1
3,699,878 + AO356_16370 0.71 -0.8
3,699,879 - AO356_16370 0.71 +1.5
3,699,879 - AO356_16370 0.71 -2.0
3,699,879 - AO356_16370 0.71 +1.0
3,699,879 - AO356_16370 0.71 -0.7
3,699,893 + AO356_16370 0.73 -0.0
3,699,894 - AO356_16370 0.73 -1.4
3,700,279 - AO356_16375 0.15 -0.1
3,700,337 - AO356_16375 0.21 -0.2
3,700,620 + AO356_16375 0.52 +0.3
3,700,620 + AO356_16375 0.52 +1.9
3,700,621 - AO356_16375 0.52 +0.1
3,700,621 - AO356_16375 0.52 +0.1
3,700,870 + AO356_16375 0.79 -0.2
3,700,870 + AO356_16375 0.79 +1.1
3,700,870 + AO356_16375 0.79 +0.4
3,700,870 + AO356_16375 0.79 -1.1
3,700,871 - AO356_16375 0.79 -1.6
3,700,951 + AO356_16375 0.88 -0.2
3,700,951 + AO356_16375 0.88 +0.9
3,700,951 + AO356_16375 0.88 +1.2
3,700,952 - AO356_16375 0.88 +1.1

Or see this region's nucleotide sequence