Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03265

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03260 and AO356_03265 are separated by 245 nucleotidesAO356_03265 and AO356_03270 are separated by 230 nucleotidesAO356_03270 and AO356_03275 are separated by 11 nucleotides AO356_03260: AO356_03260 - hydrolase TatD, at 722,960 to 723,766 _03260 AO356_03265: AO356_03265 - chemotaxis protein, at 724,012 to 725,493 _03265 AO356_03270: AO356_03270 - terminase, at 725,724 to 726,098 _03270 AO356_03275: AO356_03275 - acyl-CoA thioesterase, at 726,110 to 726,907 _03275 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 723.038 kb on + strandat 723.038 kb on + strandat 723.038 kb on + strandat 723.039 kb on - strandat 723.342 kb on + strand, within AO356_03260at 723.467 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.493 kb on + strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.555 kb on + strand, within AO356_03260at 723.594 kb on - strand, within AO356_03260at 723.607 kb on + strand, within AO356_03260at 723.650 kb on + strand, within AO356_03260at 723.651 kb on - strand, within AO356_03260at 723.812 kb on + strandat 724.026 kb on + strandat 724.027 kb on - strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.032 kb on + strandat 724.033 kb on - strandat 724.033 kb on - strandat 724.033 kb on - strandat 724.046 kb on - strandat 724.046 kb on - strandat 724.077 kb on + strandat 724.102 kb on + strandat 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.400 kb on + strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.401 kb on - strand, within AO356_03265at 724.438 kb on + strand, within AO356_03265at 724.805 kb on - strand, within AO356_03265at 724.805 kb on - strand, within AO356_03265at 725.126 kb on + strand, within AO356_03265at 725.127 kb on - strand, within AO356_03265at 725.602 kb on + strandat 725.621 kb on - strandat 725.621 kb on - strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.682 kb on + strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.683 kb on - strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.695 kb on + strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.696 kb on - strandat 725.717 kb on + strandat 725.717 kb on + strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.718 kb on - strandat 725.769 kb on + strand, within AO356_03270at 725.770 kb on - strand, within AO356_03270at 725.863 kb on + strand, within AO356_03270at 725.863 kb on + strand, within AO356_03270at 725.864 kb on - strand, within AO356_03270at 726.089 kb on + strandat 726.090 kb on - strandat 726.090 kb on - strandat 726.090 kb on - strandat 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.433 kb on + strand, within AO356_03275at 726.434 kb on - strand, within AO356_03275

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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723,038 + -0.2
723,038 + +0.6
723,038 + +0.6
723,039 - -1.6
723,342 + AO356_03260 0.47 -1.3
723,467 + AO356_03260 0.63 +0.1
723,487 + AO356_03260 0.65 +0.0
723,487 + AO356_03260 0.65 +0.1
723,487 + AO356_03260 0.65 -0.7
723,488 - AO356_03260 0.65 +0.4
723,488 - AO356_03260 0.65 -0.3
723,493 + AO356_03260 0.66 +0.4
723,494 - AO356_03260 0.66 +0.5
723,494 - AO356_03260 0.66 -0.7
723,494 - AO356_03260 0.66 -0.3
723,494 - AO356_03260 0.66 -1.2
723,555 + AO356_03260 0.74 +0.0
723,594 - AO356_03260 0.79 +0.1
723,607 + AO356_03260 0.80 -0.7
723,650 + AO356_03260 0.86 -0.8
723,651 - AO356_03260 0.86 -0.9
723,812 + -0.3
724,026 + -0.1
724,027 - +0.7
724,032 + +0.0
724,032 + -0.3
724,032 + -1.2
724,032 + -0.1
724,032 + +0.5
724,033 - -0.4
724,033 - -0.3
724,033 - -1.5
724,046 - +0.9
724,046 - +0.5
724,077 + -1.1
724,102 + +0.2
724,400 + AO356_03265 0.26 +0.0
724,400 + AO356_03265 0.26 -0.2
724,400 + AO356_03265 0.26 +0.0
724,400 + AO356_03265 0.26 -0.8
724,401 - AO356_03265 0.26 -0.3
724,401 - AO356_03265 0.26 -0.3
724,401 - AO356_03265 0.26 +0.4
724,401 - AO356_03265 0.26 +0.4
724,401 - AO356_03265 0.26 +0.0
724,401 - AO356_03265 0.26 -0.2
724,401 - AO356_03265 0.26 +0.6
724,401 - AO356_03265 0.26 +0.5
724,401 - AO356_03265 0.26 +0.4
724,438 + AO356_03265 0.29 -0.1
724,805 - AO356_03265 0.54 -0.9
724,805 - AO356_03265 0.54 -0.8
725,126 + AO356_03265 0.75 -2.3
725,127 - AO356_03265 0.75 +0.5
725,602 + -0.3
725,621 - -0.6
725,621 - +0.2
725,682 + +0.5
725,682 + -1.3
725,682 + +0.2
725,682 + +0.0
725,683 - -0.1
725,683 - -0.5
725,683 - +0.0
725,683 - +0.7
725,683 - +0.6
725,683 - +0.0
725,695 + -0.9
725,695 + -1.5
725,695 + -2.0
725,695 + -1.4
725,695 + -0.8
725,696 - +0.1
725,696 - -0.2
725,696 - +0.1
725,696 - -0.6
725,696 - +0.5
725,696 - -0.5
725,696 - -0.3
725,717 + -0.0
725,717 + +1.9
725,718 - +1.3
725,718 - -0.1
725,718 - +1.5
725,718 - -0.1
725,718 - +0.6
725,769 + AO356_03270 0.12 -1.0
725,770 - AO356_03270 0.12 -1.6
725,863 + AO356_03270 0.37 +0.2
725,863 + AO356_03270 0.37 -1.1
725,864 - AO356_03270 0.37 -0.2
726,089 + -0.8
726,090 - +0.6
726,090 - +0.6
726,090 - -0.1
726,225 + AO356_03275 0.14 -0.2
726,225 + AO356_03275 0.14 +0.2
726,225 + AO356_03275 0.14 -0.4
726,225 + AO356_03275 0.14 -0.1
726,226 - AO356_03275 0.15 +0.1
726,226 - AO356_03275 0.15 +0.3
726,433 + AO356_03275 0.40 -0.6
726,434 - AO356_03275 0.41 -0.1

Or see this region's nucleotide sequence