Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04384 and SMc04385 are separated by 34 nucleotides SMc04385 and SMc04386 are separated by 16 nucleotides
SMc04384: SMc04384 - (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) , at 3,584,658 to 3,586,079
SMc04384
SMc04385: SMc04385 - L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) , at 3,586,114 to 3,587,646
SMc04385
SMc04386: SMc04386 - 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) , at 3,587,663 to 3,588,895
SMc04386
Position (kb)
3586
3587
3588 Strain fitness (log2 ratio)
-1
0
1
2 at 3585.123 kb on + strand, within SMc04384 at 3585.501 kb on + strand, within SMc04384 at 3585.592 kb on + strand, within SMc04384 at 3585.593 kb on - strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.610 kb on + strand, within SMc04384 at 3585.683 kb on - strand, within SMc04384 at 3585.755 kb on + strand, within SMc04384 at 3585.755 kb on + strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.756 kb on - strand, within SMc04384 at 3585.984 kb on + strand at 3585.993 kb on + strand at 3585.993 kb on + strand at 3585.994 kb on - strand at 3585.994 kb on - strand at 3586.094 kb on + strand at 3586.094 kb on + strand at 3586.262 kb on + strand at 3586.329 kb on - strand, within SMc04385 at 3587.077 kb on + strand, within SMc04385 at 3587.243 kb on - strand, within SMc04385 at 3587.245 kb on + strand, within SMc04385 at 3587.246 kb on - strand, within SMc04385 at 3587.320 kb on + strand, within SMc04385 at 3587.566 kb on + strand at 3587.566 kb on + strand at 3587.568 kb on + strand at 3587.596 kb on + strand at 3587.883 kb on - strand, within SMc04386 at 3588.063 kb on - strand, within SMc04386 at 3588.091 kb on + strand, within SMc04386 at 3588.234 kb on - strand, within SMc04386 at 3588.309 kb on + strand, within SMc04386 at 3588.311 kb on + strand, within SMc04386 at 3588.311 kb on + strand, within SMc04386 at 3588.311 kb on + strand, within SMc04386 at 3588.312 kb on - strand, within SMc04386 at 3588.312 kb on - strand, within SMc04386 at 3588.312 kb on - strand, within SMc04386 at 3588.312 kb on - strand, within SMc04386 at 3588.312 kb on - strand, within SMc04386 at 3588.413 kb on + strand, within SMc04386 at 3588.414 kb on - strand, within SMc04386
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 3,585,123 + SMc04384 0.33 +0.1 3,585,501 + SMc04384 0.59 -0.1 3,585,592 + SMc04384 0.66 +0.5 3,585,593 - SMc04384 0.66 -0.6 3,585,610 + SMc04384 0.67 -0.6 3,585,610 + SMc04384 0.67 -0.7 3,585,610 + SMc04384 0.67 +0.1 3,585,683 - SMc04384 0.72 +2.3 3,585,755 + SMc04384 0.77 +0.2 3,585,755 + SMc04384 0.77 -0.2 3,585,756 - SMc04384 0.77 +0.6 3,585,756 - SMc04384 0.77 -1.0 3,585,756 - SMc04384 0.77 +0.2 3,585,756 - SMc04384 0.77 +0.5 3,585,984 + -1.1 3,585,993 + +0.0 3,585,993 + -0.3 3,585,994 - +0.1 3,585,994 - +0.4 3,586,094 + +0.5 3,586,094 + +0.2 3,586,262 + +0.4 3,586,329 - SMc04385 0.14 +0.0 3,587,077 + SMc04385 0.63 -0.5 3,587,243 - SMc04385 0.74 +0.3 3,587,245 + SMc04385 0.74 -0.5 3,587,246 - SMc04385 0.74 +1.2 3,587,320 + SMc04385 0.79 +0.2 3,587,566 + +0.4 3,587,566 + +0.5 3,587,568 + -0.4 3,587,596 + +1.4 3,587,883 - SMc04386 0.18 +0.0 3,588,063 - SMc04386 0.32 -0.7 3,588,091 + SMc04386 0.35 +0.5 3,588,234 - SMc04386 0.46 -1.1 3,588,309 + SMc04386 0.52 -0.3 3,588,311 + SMc04386 0.53 -0.3 3,588,311 + SMc04386 0.53 -0.8 3,588,311 + SMc04386 0.53 +0.0 3,588,312 - SMc04386 0.53 -0.4 3,588,312 - SMc04386 0.53 -1.2 3,588,312 - SMc04386 0.53 +0.0 3,588,312 - SMc04386 0.53 -0.1 3,588,312 - SMc04386 0.53 -0.9 3,588,413 + SMc04386 0.61 -0.7 3,588,414 - SMc04386 0.61 +0.0
Or see this region's nucleotide sequence