Strain Fitness in Sinorhizobium meliloti 1021 around SMc03229

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03226 and SMc03227 are separated by 14 nucleotidesSMc03227 and SMc03228 are separated by 6 nucleotidesSMc03228 and SMc03229 are separated by 17 nucleotidesSMc03229 and SMc03230 are separated by 10 nucleotides SMc03226: SMc03226 - hypothetical protein, at 3,335,825 to 3,336,481 SMc03226 SMc03227: SMc03227 - hypothetical protein, at 3,336,496 to 3,336,927 SMc03227 SMc03228: SMc03228 - YciI-like protein, at 3,336,934 to 3,337,227 SMc03228 SMc03229: SMc03229 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 3,337,245 to 3,338,246 SMc03229 SMc03230: SMc03230 - DNA-binding/iron metalloprotein/AP endonuclease, at 3,338,257 to 3,339,339 SMc03230 Position (kb) 3337 3338 3339Strain fitness (log2 ratio) -3 -2 -1 0 1at 3336.484 kb on + strandat 3336.484 kb on + strandat 3336.585 kb on + strand, within SMc03227at 3336.773 kb on + strand, within SMc03227at 3336.775 kb on + strand, within SMc03227at 3336.828 kb on - strand, within SMc03227at 3336.965 kb on + strand, within SMc03228at 3336.965 kb on + strand, within SMc03228at 3336.965 kb on + strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3336.966 kb on - strand, within SMc03228at 3337.148 kb on + strand, within SMc03228at 3337.954 kb on + strand, within SMc03229at 3337.959 kb on - strand, within SMc03229at 3338.042 kb on - strand, within SMc03229

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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3,336,484 + -1.2
3,336,484 + +1.7
3,336,585 + SMc03227 0.21 -0.3
3,336,773 + SMc03227 0.64 +0.1
3,336,775 + SMc03227 0.65 -1.0
3,336,828 - SMc03227 0.77 -0.2
3,336,965 + SMc03228 0.11 -0.2
3,336,965 + SMc03228 0.11 -0.2
3,336,965 + SMc03228 0.11 -1.1
3,336,966 - SMc03228 0.11 +0.0
3,336,966 - SMc03228 0.11 +0.5
3,336,966 - SMc03228 0.11 +0.8
3,337,148 + SMc03228 0.73 -0.2
3,337,954 + SMc03229 0.71 -2.5
3,337,959 - SMc03229 0.71 -3.1
3,338,042 - SMc03229 0.80 -3.0

Or see this region's nucleotide sequence