Strain Fitness in Sinorhizobium meliloti 1021 around SMc02766

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02768 and SMc02767 are separated by 237 nucleotidesSMc02767 and SMc02766 are separated by 24 nucleotidesSMc02766 and SMc02765 are separated by 5 nucleotidesSMc02765 and SMc02764 are separated by 53 nucleotides SMc02768: SMc02768 - hypothetical protein, at 26,383 to 27,138 SMc02768 SMc02767: SMc02767 - N-(5'-phosphoribosyl)anthranilate isomerase, at 27,376 to 28,023 SMc02767 SMc02766: SMc02766 - tryptophan synthase subunit beta, at 28,048 to 29,268 SMc02766 SMc02765: SMc02765 - tryptophan synthase subunit alpha, at 29,274 to 30,113 SMc02765 SMc02764: SMc02764 - acetyl-CoA carboxylase subunit beta, at 30,167 to 31,081 SMc02764 Position (kb) 28 29 30Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 27.455 kb on + strand, within SMc02767at 27.456 kb on - strand, within SMc02767at 27.670 kb on + strand, within SMc02767at 27.671 kb on - strand, within SMc02767at 27.736 kb on + strand, within SMc02767at 27.737 kb on - strand, within SMc02767at 27.737 kb on - strand, within SMc02767at 27.737 kb on - strand, within SMc02767at 27.859 kb on + strand, within SMc02767at 27.860 kb on - strand, within SMc02767at 27.860 kb on - strand, within SMc02767at 27.860 kb on - strand, within SMc02767at 27.860 kb on - strand, within SMc02767at 27.933 kb on + strand, within SMc02767at 27.933 kb on + strand, within SMc02767at 27.934 kb on - strand, within SMc02767at 28.062 kb on + strandat 28.112 kb on + strandat 28.113 kb on - strandat 28.113 kb on - strandat 28.234 kb on + strand, within SMc02766at 28.234 kb on + strand, within SMc02766at 28.234 kb on + strand, within SMc02766at 28.235 kb on - strand, within SMc02766at 28.236 kb on + strand, within SMc02766at 28.258 kb on + strand, within SMc02766at 28.303 kb on + strand, within SMc02766at 28.304 kb on - strand, within SMc02766at 28.480 kb on + strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.481 kb on - strand, within SMc02766at 28.532 kb on - strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.636 kb on + strand, within SMc02766at 28.637 kb on - strand, within SMc02766at 28.640 kb on - strand, within SMc02766at 28.646 kb on + strand, within SMc02766at 28.646 kb on + strand, within SMc02766at 28.647 kb on - strand, within SMc02766at 28.647 kb on - strand, within SMc02766at 28.936 kb on + strand, within SMc02766at 28.936 kb on + strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 28.937 kb on - strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.053 kb on + strand, within SMc02766at 29.054 kb on - strand, within SMc02766at 29.266 kb on + strandat 29.267 kb on - strandat 29.341 kb on - strandat 29.580 kb on + strand, within SMc02765at 29.584 kb on - strand, within SMc02765at 29.584 kb on - strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.595 kb on + strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.596 kb on - strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.597 kb on + strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.598 kb on - strand, within SMc02765at 29.601 kb on + strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.602 kb on - strand, within SMc02765at 29.799 kb on + strand, within SMc02765at 29.802 kb on + strand, within SMc02765at 29.802 kb on + strand, within SMc02765at 29.803 kb on - strand, within SMc02765at 29.803 kb on - strand, within SMc02765at 29.885 kb on + strand, within SMc02765at 29.886 kb on - strand, within SMc02765at 29.886 kb on - strand, within SMc02765

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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27,455 + SMc02767 0.12 -5.5
27,456 - SMc02767 0.12 -0.2
27,670 + SMc02767 0.45 -1.5
27,671 - SMc02767 0.46 -5.4
27,736 + SMc02767 0.56 -3.6
27,737 - SMc02767 0.56 -6.2
27,737 - SMc02767 0.56 -6.1
27,737 - SMc02767 0.56 -4.6
27,859 + SMc02767 0.75 -3.7
27,860 - SMc02767 0.75 -6.8
27,860 - SMc02767 0.75 -7.1
27,860 - SMc02767 0.75 -4.8
27,860 - SMc02767 0.75 -6.2
27,933 + SMc02767 0.86 -5.2
27,933 + SMc02767 0.86 -1.6
27,934 - SMc02767 0.86 -4.1
28,062 + -2.1
28,112 + -4.1
28,113 - -5.0
28,113 - -4.7
28,234 + SMc02766 0.15 -6.0
28,234 + SMc02766 0.15 -5.5
28,234 + SMc02766 0.15 -5.2
28,235 - SMc02766 0.15 -6.8
28,236 + SMc02766 0.15 -4.4
28,258 + SMc02766 0.17 -2.9
28,303 + SMc02766 0.21 -2.3
28,304 - SMc02766 0.21 -2.7
28,480 + SMc02766 0.35 -5.8
28,481 - SMc02766 0.35 -2.7
28,481 - SMc02766 0.35 -5.5
28,481 - SMc02766 0.35 -3.4
28,481 - SMc02766 0.35 -6.0
28,481 - SMc02766 0.35 -7.0
28,532 - SMc02766 0.40 -4.4
28,636 + SMc02766 0.48 -7.6
28,636 + SMc02766 0.48 -6.8
28,636 + SMc02766 0.48 -3.9
28,636 + SMc02766 0.48 -7.6
28,637 - SMc02766 0.48 -6.1
28,640 - SMc02766 0.48 -6.6
28,646 + SMc02766 0.49 -1.2
28,646 + SMc02766 0.49 -4.7
28,647 - SMc02766 0.49 -6.2
28,647 - SMc02766 0.49 -5.8
28,936 + SMc02766 0.73 -4.7
28,936 + SMc02766 0.73 -3.1
28,937 - SMc02766 0.73 -4.7
28,937 - SMc02766 0.73 -6.4
28,937 - SMc02766 0.73 -4.7
28,937 - SMc02766 0.73 -5.8
28,937 - SMc02766 0.73 -6.5
29,053 + SMc02766 0.82 -8.2
29,053 + SMc02766 0.82 -6.4
29,053 + SMc02766 0.82 -4.0
29,053 + SMc02766 0.82 -2.9
29,054 - SMc02766 0.82 -1.6
29,266 + -3.3
29,267 - -5.4
29,341 - -3.6
29,580 + SMc02765 0.36 -2.9
29,584 - SMc02765 0.37 -3.6
29,584 - SMc02765 0.37 -4.7
29,595 + SMc02765 0.38 -6.1
29,595 + SMc02765 0.38 -5.6
29,595 + SMc02765 0.38 -7.4
29,595 + SMc02765 0.38 -3.5
29,595 + SMc02765 0.38 -7.0
29,595 + SMc02765 0.38 -5.2
29,595 + SMc02765 0.38 -7.1
29,596 - SMc02765 0.38 -5.8
29,596 - SMc02765 0.38 -2.6
29,596 - SMc02765 0.38 -3.3
29,596 - SMc02765 0.38 -8.2
29,596 - SMc02765 0.38 -2.7
29,597 + SMc02765 0.38 -4.0
29,597 + SMc02765 0.38 -3.1
29,597 + SMc02765 0.38 -1.3
29,598 - SMc02765 0.39 -3.5
29,598 - SMc02765 0.39 -4.8
29,598 - SMc02765 0.39 -3.7
29,601 + SMc02765 0.39 -4.4
29,602 - SMc02765 0.39 -4.6
29,602 - SMc02765 0.39 -4.4
29,602 - SMc02765 0.39 -4.7
29,602 - SMc02765 0.39 -4.4
29,799 + SMc02765 0.62 -2.2
29,802 + SMc02765 0.63 -6.8
29,802 + SMc02765 0.63 -6.0
29,803 - SMc02765 0.63 -6.6
29,803 - SMc02765 0.63 -8.2
29,885 + SMc02765 0.73 -4.3
29,886 - SMc02765 0.73 -6.9
29,886 - SMc02765 0.73 -6.4

Or see this region's nucleotide sequence