Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02169 and SMc02167 overlap by 4 nucleotides SMc02167 and SMc02166 are separated by 189 nucleotides SMc02166 and SMc02165 are separated by 17 nucleotides SMc02165 and SMc02164 are separated by 56 nucleotides
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
SMc02165: SMc02165 - orotate phosphoribosyltransferase, at 528,931 to 529,629
SMc02165
SMc02164: SMc02164 - fructokinase, at 529,686 to 530,612
SMc02164
Position (kb) 527
528
529 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 527.152 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.428 kb on + strand, within SMc02167 at 527.429 kb on - strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.450 kb on + strand, within SMc02167 at 527.502 kb on - strand, within SMc02167 at 527.561 kb on + strand, within SMc02167 at 527.574 kb on - strand, within SMc02167 at 527.604 kb on - strand, within SMc02167 at 527.616 kb on + strand, within SMc02167 at 527.617 kb on - strand, within SMc02167 at 527.679 kb on - strand at 527.884 kb on + strand at 527.885 kb on - strand at 527.885 kb on - strand at 527.887 kb on - strand at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.170 kb on + strand, within SMc02166 at 528.171 kb on - strand, within SMc02166 at 528.417 kb on - strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.518 kb on + strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 529.030 kb on + strand, within SMc02165 at 529.065 kb on + strand, within SMc02165 at 529.091 kb on - strand, within SMc02165 at 529.195 kb on - strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.248 kb on - strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.295 kb on - strand, within SMc02165 at 529.297 kb on - strand, within SMc02165 at 529.423 kb on + strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.665 kb on + strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.851 kb on - strand, within SMc02164
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 527,152 + SMc02167 0.15 -0.6 527,428 + SMc02167 0.59 -0.5 527,428 + SMc02167 0.59 -1.4 527,428 + SMc02167 0.59 +0.3 527,428 + SMc02167 0.59 +0.2 527,429 - SMc02167 0.59 -0.3 527,450 + SMc02167 0.63 -0.4 527,450 + SMc02167 0.63 +3.0 527,450 + SMc02167 0.63 -0.2 527,502 - SMc02167 0.71 -0.4 527,561 + SMc02167 0.81 -0.3 527,574 - SMc02167 0.83 -0.0 527,604 - SMc02167 0.88 -0.2 527,616 + SMc02167 0.90 +0.1 527,617 - SMc02167 0.90 +0.0 527,679 - +0.1 527,884 + -4.8 527,885 - -4.8 527,885 - -4.6 527,887 - -3.4 528,096 - SMc02166 0.22 -4.3 528,096 - SMc02166 0.22 -5.7 528,096 - SMc02166 0.22 -3.7 528,170 + SMc02166 0.29 -3.6 528,171 - SMc02166 0.29 -1.8 528,417 - SMc02166 0.52 -3.4 528,515 + SMc02166 0.62 -2.1 528,515 + SMc02166 0.62 -4.2 528,516 - SMc02166 0.62 -5.8 528,516 - SMc02166 0.62 -4.4 528,518 + SMc02166 0.62 -2.8 528,519 - SMc02166 0.62 -3.9 528,519 - SMc02166 0.62 -5.3 528,665 + SMc02166 0.76 -5.9 528,665 + SMc02166 0.76 -2.8 528,665 + SMc02166 0.76 -5.0 528,666 - SMc02166 0.76 -4.9 528,666 - SMc02166 0.76 -0.3 529,030 + SMc02165 0.14 -5.0 529,065 + SMc02165 0.19 -4.8 529,091 - SMc02165 0.23 -4.2 529,195 - SMc02165 0.38 -2.6 529,243 + SMc02165 0.45 -3.2 529,243 + SMc02165 0.45 -3.2 529,243 + SMc02165 0.45 -3.5 529,243 + SMc02165 0.45 -1.1 529,243 + SMc02165 0.45 -1.0 529,244 - SMc02165 0.45 -2.3 529,244 - SMc02165 0.45 -4.4 529,248 - SMc02165 0.45 -1.5 529,294 + SMc02165 0.52 -2.8 529,294 + SMc02165 0.52 -5.1 529,294 + SMc02165 0.52 -3.8 529,294 + SMc02165 0.52 -1.6 529,295 - SMc02165 0.52 -3.9 529,297 - SMc02165 0.52 -2.2 529,423 + SMc02165 0.70 -3.5 529,424 - SMc02165 0.71 -2.9 529,424 - SMc02165 0.71 -5.1 529,480 + SMc02165 0.79 -6.3 529,480 + SMc02165 0.79 -5.9 529,481 - SMc02165 0.79 -3.8 529,481 - SMc02165 0.79 -3.3 529,665 + -0.3 529,666 - -1.1 529,666 - -2.0 529,666 - -0.6 529,666 - -1.8 529,666 - -1.5 529,851 - SMc02164 0.18 -1.2
Or see this region's nucleotide sequence