Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1483 and SMa5009 are separated by 60 nucleotides SMa5009 and SMa1485 overlap by 4 nucleotides SMa1485 and SMa1487 are separated by 228 nucleotides SMa1487 and SMa1488 overlap by 4 nucleotides
SMa1483: SMa1483 - dehydrogenase, at 815,138 to 817,558
SMa1483
SMa5009: SMa5009 - hypothetical protein, at 817,619 to 817,969
SMa5009
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
SMa1487: SMa1487 - cytochrome C, at 819,484 to 819,852
SMa1487
SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092
SMa1488
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 817.187 kb on + strand, within SMa1483 at 817.188 kb on - strand, within SMa1483 at 817.404 kb on - strand at 817.406 kb on - strand at 817.597 kb on - strand at 817.731 kb on + strand at 817.731 kb on + strand, within SMa5009 at 817.732 kb on - strand, within SMa5009 at 817.761 kb on + strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.765 kb on - strand, within SMa5009 at 817.834 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.973 kb on - strand at 818.420 kb on + strand, within SMa1485 at 818.420 kb on + strand, within SMa1485 at 818.753 kb on + strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.940 kb on - strand, within SMa1485 at 819.108 kb on + strand, within SMa1485 at 819.109 kb on - strand, within SMa1485 at 819.255 kb on + strand at 819.255 kb on + strand at 819.255 kb on + strand at 819.256 kb on - strand at 819.256 kb on - strand at 819.268 kb on + strand at 819.270 kb on + strand at 819.270 kb on + strand at 819.271 kb on - strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.310 kb on - strand at 819.341 kb on + strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.424 kb on - strand at 819.424 kb on - strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.495 kb on + strand at 819.630 kb on + strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.645 kb on - strand, within SMa1487 at 820.054 kb on + strand at 820.084 kb on + strand, within SMa1488 at 820.084 kb on + strand, within SMa1488 at 820.085 kb on - strand, within SMa1488
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 817,187 + SMa1483 0.85 +0.1 817,188 - SMa1483 0.85 +1.4 817,404 - -0.3 817,406 - -0.3 817,597 - +1.3 817,731 + +2.1 817,731 + SMa5009 0.32 -0.7 817,732 - SMa5009 0.32 -0.2 817,761 + SMa5009 0.40 -0.6 817,762 - SMa5009 0.41 +0.0 817,762 - SMa5009 0.41 +0.6 817,762 - SMa5009 0.41 +0.1 817,764 + SMa5009 0.41 -0.5 817,764 + SMa5009 0.41 +0.6 817,764 + SMa5009 0.41 -0.2 817,764 + SMa5009 0.41 -1.9 817,764 + SMa5009 0.41 +0.0 817,764 + SMa5009 0.41 -0.6 817,764 + SMa5009 0.41 -1.3 817,765 - SMa5009 0.42 +0.3 817,834 - SMa5009 0.61 -0.1 817,858 - SMa5009 0.68 -0.4 817,858 - SMa5009 0.68 +0.2 817,973 - +0.5 818,420 + SMa1485 0.35 +0.2 818,420 + SMa1485 0.35 +1.0 818,753 + SMa1485 0.61 -1.0 818,754 - SMa1485 0.61 +0.7 818,754 - SMa1485 0.61 -0.1 818,940 - SMa1485 0.76 +0.3 819,108 + SMa1485 0.89 +0.1 819,109 - SMa1485 0.89 +0.4 819,255 + -0.5 819,255 + +0.6 819,255 + -0.4 819,256 - +0.3 819,256 - -0.1 819,268 + -0.3 819,270 + -1.1 819,270 + -1.0 819,271 - +0.0 819,309 + +0.5 819,309 + -1.8 819,309 + +0.6 819,309 + +0.1 819,310 - +0.1 819,341 + -0.2 819,372 - +0.3 819,372 - +0.3 819,372 - -1.1 819,424 - -0.4 819,424 - +0.2 819,485 + +0.1 819,485 + +0.3 819,485 + +0.3 819,495 + +0.0 819,630 + SMa1487 0.40 -0.5 819,631 - SMa1487 0.40 +0.3 819,631 - SMa1487 0.40 +0.2 819,644 + SMa1487 0.43 +0.0 819,644 + SMa1487 0.43 -0.8 819,645 - SMa1487 0.44 +0.2 820,054 + -1.1 820,084 + SMa1488 0.10 +0.4 820,084 + SMa1488 0.10 -0.1 820,085 - SMa1488 0.11 -0.3
Or see this region's nucleotide sequence