Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0196 and SMa0197 are separated by 14 nucleotides SMa0197 and SMa0198 overlap by 4 nucleotides SMa0198 and SMa0199 overlap by 4 nucleotides
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825
SMa0197
SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769
SMa0198
SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229
SMa0199
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-1
0
1 at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196 at 107.424 kb on + strand, within SMa0196 at 107.425 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.629 kb on + strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.781 kb on + strand at 107.782 kb on - strand at 107.844 kb on + strand at 107.969 kb on + strand at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.269 kb on + strand, within SMa0197 at 108.270 kb on - strand, within SMa0197 at 108.361 kb on - strand, within SMa0197 at 108.489 kb on + strand, within SMa0197 at 108.491 kb on + strand, within SMa0197 at 108.492 kb on - strand, within SMa0197 at 108.813 kb on + strand at 109.116 kb on + strand, within SMa0198 at 109.117 kb on - strand, within SMa0198 at 109.145 kb on - strand, within SMa0198 at 109.272 kb on + strand, within SMa0198 at 109.273 kb on - strand, within SMa0198 at 109.465 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.795 kb on + strand at 109.795 kb on + strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 106,950 + +0.1 106,981 - -0.1 106,989 + -0.2 107,243 + SMa0196 0.32 -0.8 107,424 + SMa0196 0.52 +1.1 107,425 - SMa0196 0.52 -0.6 107,452 - SMa0196 0.55 -0.7 107,452 - SMa0196 0.55 -1.2 107,452 - SMa0196 0.55 -0.4 107,629 + SMa0196 0.74 -0.1 107,630 - SMa0196 0.74 +1.5 107,630 - SMa0196 0.74 -0.2 107,781 + +0.1 107,782 - -0.5 107,844 + -0.0 107,969 + +0.2 108,182 + SMa0197 0.32 +1.0 108,182 + SMa0197 0.32 +0.5 108,182 + SMa0197 0.32 +0.0 108,269 + SMa0197 0.41 +0.2 108,270 - SMa0197 0.41 +0.5 108,361 - SMa0197 0.51 +0.8 108,489 + SMa0197 0.64 +0.6 108,491 + SMa0197 0.65 +0.2 108,492 - SMa0197 0.65 -0.0 108,813 + +0.2 109,116 + SMa0198 0.31 +0.3 109,117 - SMa0198 0.31 +0.2 109,145 - SMa0198 0.34 +0.1 109,272 + SMa0198 0.47 +0.7 109,273 - SMa0198 0.48 -0.1 109,465 + SMa0198 0.68 +0.6 109,663 + SMa0198 0.89 +0.4 109,663 + SMa0198 0.89 +1.0 109,663 + SMa0198 0.89 -0.5 109,663 + SMa0198 0.89 +0.2 109,663 + SMa0198 0.89 +0.2 109,663 + SMa0198 0.89 +0.5 109,663 + SMa0198 0.89 +0.4 109,664 - SMa0198 0.89 +0.5 109,664 - SMa0198 0.89 -1.6 109,664 - SMa0198 0.89 +0.7 109,664 - SMa0198 0.89 +0.1 109,795 + +0.3 109,795 + +0.3 109,796 - -0.2 109,796 - +0.2 109,796 - +0.1 109,796 - +0.1
Or see this region's nucleotide sequence