Strain Fitness in Sinorhizobium meliloti 1021 around SMa0064

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0062 and SMa0063 are separated by 129 nucleotidesSMa0063 and SMa0064 are separated by 2 nucleotidesSMa0064 and SMa0065 are separated by 62 nucleotidesSMa0065 and SMa0067 are separated by 57 nucleotides SMa0062: SMa0062 - GntR family transcriptional regulator, at 32,634 to 33,323 SMa0062 SMa0063: SMa0063 - GntR family transcriptional regulator, at 33,453 to 34,187 SMa0063 SMa0064: SMa0064 - dehydratase/enolase, at 34,190 to 35,392 SMa0064 SMa0065: SMa0065 - GntR family transcriptional regulator, at 35,455 to 36,147 SMa0065 SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167 SMa0067 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1at 33.288 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.351 kb on + strandat 33.352 kb on - strandat 33.616 kb on + strand, within SMa0063at 33.642 kb on + strand, within SMa0063at 33.643 kb on - strand, within SMa0063at 34.010 kb on + strand, within SMa0063at 34.064 kb on + strand, within SMa0063at 34.157 kb on - strandat 34.183 kb on - strandat 34.238 kb on - strandat 34.319 kb on + strand, within SMa0064at 34.319 kb on + strand, within SMa0064at 34.319 kb on + strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.320 kb on - strand, within SMa0064at 34.401 kb on - strand, within SMa0064at 34.401 kb on - strand, within SMa0064at 34.401 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.542 kb on - strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.565 kb on + strand, within SMa0064at 34.566 kb on - strand, within SMa0064at 34.566 kb on - strand, within SMa0064at 34.567 kb on + strand, within SMa0064at 34.628 kb on + strand, within SMa0064at 34.629 kb on - strand, within SMa0064at 34.629 kb on - strand, within SMa0064at 34.754 kb on - strand, within SMa0064at 34.754 kb on - strand, within SMa0064at 34.899 kb on - strand, within SMa0064at 35.055 kb on + strand, within SMa0064at 35.056 kb on - strand, within SMa0064at 35.234 kb on + strand, within SMa0064at 35.237 kb on + strand, within SMa0064at 35.237 kb on + strand, within SMa0064at 35.237 kb on + strand, within SMa0064at 35.238 kb on - strand, within SMa0064at 35.238 kb on - strand, within SMa0064at 35.250 kb on - strand, within SMa0064at 35.261 kb on - strand, within SMa0064at 35.261 kb on - strand, within SMa0064at 35.597 kb on + strand, within SMa0065at 35.683 kb on + strand, within SMa0065at 35.683 kb on + strand, within SMa0065at 35.683 kb on + strand, within SMa0065at 35.683 kb on + strand, within SMa0065at 35.684 kb on - strand, within SMa0065at 35.684 kb on - strand, within SMa0065at 35.684 kb on - strand, within SMa0065at 35.684 kb on - strand, within SMa0065at 35.684 kb on - strand, within SMa0065at 36.020 kb on + strand, within SMa0065at 36.021 kb on - strand, within SMa0065at 36.021 kb on - strand, within SMa0065at 36.161 kb on + strandat 36.162 kb on - strandat 36.185 kb on - strandat 36.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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33,288 + +0.1
33,351 + -0.2
33,351 + -0.5
33,351 + -0.3
33,352 - +0.5
33,616 + SMa0063 0.22 -0.2
33,642 + SMa0063 0.26 -1.1
33,643 - SMa0063 0.26 -1.2
34,010 + SMa0063 0.76 +0.7
34,064 + SMa0063 0.83 -0.4
34,157 - +0.1
34,183 - -1.0
34,238 - +1.0
34,319 + SMa0064 0.11 -0.7
34,319 + SMa0064 0.11 +0.0
34,319 + SMa0064 0.11 -0.7
34,320 - SMa0064 0.11 -0.2
34,320 - SMa0064 0.11 +0.2
34,320 - SMa0064 0.11 +0.1
34,320 - SMa0064 0.11 -0.4
34,320 - SMa0064 0.11 -0.2
34,320 - SMa0064 0.11 +0.3
34,320 - SMa0064 0.11 -0.0
34,401 - SMa0064 0.18 +0.7
34,401 - SMa0064 0.18 -0.1
34,401 - SMa0064 0.18 -0.1
34,542 - SMa0064 0.29 +0.0
34,542 - SMa0064 0.29 +0.0
34,542 - SMa0064 0.29 +0.2
34,542 - SMa0064 0.29 +0.4
34,542 - SMa0064 0.29 -0.1
34,542 - SMa0064 0.29 -0.4
34,565 + SMa0064 0.31 +1.4
34,565 + SMa0064 0.31 -2.3
34,565 + SMa0064 0.31 -0.1
34,565 + SMa0064 0.31 -0.3
34,565 + SMa0064 0.31 -0.5
34,565 + SMa0064 0.31 -0.5
34,565 + SMa0064 0.31 -0.5
34,565 + SMa0064 0.31 -1.0
34,565 + SMa0064 0.31 -0.1
34,566 - SMa0064 0.31 -2.6
34,566 - SMa0064 0.31 +1.2
34,567 + SMa0064 0.31 -0.3
34,628 + SMa0064 0.36 +0.1
34,629 - SMa0064 0.36 +0.3
34,629 - SMa0064 0.36 -0.1
34,754 - SMa0064 0.47 -0.1
34,754 - SMa0064 0.47 -1.0
34,899 - SMa0064 0.59 -0.1
35,055 + SMa0064 0.72 -0.5
35,056 - SMa0064 0.72 +0.3
35,234 + SMa0064 0.87 -0.6
35,237 + SMa0064 0.87 -0.8
35,237 + SMa0064 0.87 -1.0
35,237 + SMa0064 0.87 -0.0
35,238 - SMa0064 0.87 +0.6
35,238 - SMa0064 0.87 +0.2
35,250 - SMa0064 0.88 +0.1
35,261 - SMa0064 0.89 -0.4
35,261 - SMa0064 0.89 -0.2
35,597 + SMa0065 0.20 +0.8
35,683 + SMa0065 0.33 -0.2
35,683 + SMa0065 0.33 +0.4
35,683 + SMa0065 0.33 -1.4
35,683 + SMa0065 0.33 -0.0
35,684 - SMa0065 0.33 -1.0
35,684 - SMa0065 0.33 -0.5
35,684 - SMa0065 0.33 -0.7
35,684 - SMa0065 0.33 -0.5
35,684 - SMa0065 0.33 -0.0
36,020 + SMa0065 0.82 -1.0
36,021 - SMa0065 0.82 -0.7
36,021 - SMa0065 0.82 -0.1
36,161 + -0.6
36,162 - +1.1
36,185 - +0.7
36,210 - +0.3

Or see this region's nucleotide sequence