Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21109

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21107 and SM_b21108 are separated by 12 nucleotidesSM_b21108 and SM_b21109 overlap by 8 nucleotidesSM_b21109 and SM_b21110 are separated by 1 nucleotidesSM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data), at 749,230 to 750,342 _b21107 SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) (from data), at 750,355 to 750,684 _b21108 SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) (from data), at 750,677 to 751,759 _b21109 SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism (from data), at 751,761 to 752,222 _b21110 SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953 _b21111 Position (kb) 750 751 752Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 749.761 kb on + strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.983 kb on + strand, within SM_b21107at 750.007 kb on + strand, within SM_b21107at 750.008 kb on - strandat 750.008 kb on - strand, within SM_b21107at 750.008 kb on - strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.010 kb on - strand, within SM_b21107at 750.178 kb on + strand, within SM_b21107at 750.179 kb on - strand, within SM_b21107at 750.188 kb on - strand, within SM_b21107at 750.297 kb on - strandat 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.406 kb on + strand, within SM_b21108at 750.407 kb on - strand, within SM_b21108at 750.476 kb on - strand, within SM_b21108at 750.526 kb on + strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.527 kb on - strand, within SM_b21108at 750.794 kb on + strand, within SM_b21109at 750.794 kb on + strand, within SM_b21109at 750.795 kb on - strand, within SM_b21109at 750.796 kb on + strand, within SM_b21109at 750.797 kb on - strand, within SM_b21109at 751.000 kb on - strand, within SM_b21109at 751.142 kb on + strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.143 kb on - strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.256 kb on + strand, within SM_b21109at 751.257 kb on - strand, within SM_b21109at 751.472 kb on + strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.473 kb on - strand, within SM_b21109at 751.779 kb on + strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.783 kb on - strandat 751.791 kb on + strandat 751.791 kb on + strandat 752.008 kb on - strand, within SM_b21110at 752.008 kb on - strand, within SM_b21110at 752.054 kb on + strand, within SM_b21110at 752.055 kb on - strand, within SM_b21110at 752.213 kb on + strandat 752.213 kb on + strandat 752.214 kb on - strandat 752.254 kb on - strandat 752.274 kb on + strandat 752.274 kb on + strandat 752.275 kb on - strandat 752.275 kb on - strandat 752.714 kb on + strand, within SM_b21111at 752.714 kb on + strand, within SM_b21111at 752.715 kb on - strandat 752.718 kb on + strand, within SM_b21111at 752.718 kb on + strand, within SM_b21111

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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749,761 + SM_b21107 0.48 -2.5
749,761 + SM_b21107 0.48 -3.1
749,762 - SM_b21107 0.48 -4.1
749,762 - SM_b21107 0.48 -3.0
749,762 - SM_b21107 0.48 -3.2
749,762 - SM_b21107 0.48 -5.4
749,983 + SM_b21107 0.68 -3.1
750,007 + SM_b21107 0.70 -2.2
750,008 - +0.5
750,008 - SM_b21107 0.70 -5.6
750,008 - SM_b21107 0.70 -2.5
750,009 + SM_b21107 0.70 -1.8
750,009 + SM_b21107 0.70 -1.9
750,010 - SM_b21107 0.70 -3.1
750,178 + SM_b21107 0.85 -2.4
750,179 - SM_b21107 0.85 -2.0
750,188 - SM_b21107 0.86 -3.4
750,297 - -4.3
750,406 + SM_b21108 0.15 -3.8
750,406 + SM_b21108 0.15 -1.5
750,406 + SM_b21108 0.15 -4.5
750,407 - SM_b21108 0.16 -2.4
750,476 - SM_b21108 0.37 -3.6
750,526 + SM_b21108 0.52 -2.9
750,527 - SM_b21108 0.52 -3.9
750,527 - SM_b21108 0.52 -1.5
750,794 + SM_b21109 0.11 -6.1
750,794 + SM_b21109 0.11 -3.6
750,795 - SM_b21109 0.11 -5.4
750,796 + SM_b21109 0.11 -2.6
750,797 - SM_b21109 0.11 -3.2
751,000 - SM_b21109 0.30 -3.8
751,142 + SM_b21109 0.43 -4.3
751,143 - SM_b21109 0.43 -3.4
751,143 - SM_b21109 0.43 -2.8
751,256 + SM_b21109 0.53 -1.7
751,256 + SM_b21109 0.53 -0.9
751,256 + SM_b21109 0.53 -2.7
751,257 - SM_b21109 0.54 -3.9
751,472 + SM_b21109 0.73 -1.5
751,473 - SM_b21109 0.73 -3.6
751,473 - SM_b21109 0.73 -3.3
751,473 - SM_b21109 0.73 -4.7
751,779 + -2.9
751,783 - -5.2
751,783 - -2.7
751,783 - -5.0
751,783 - -5.9
751,791 + -4.6
751,791 + -1.5
752,008 - SM_b21110 0.53 -5.1
752,008 - SM_b21110 0.53 -4.6
752,054 + SM_b21110 0.63 -0.5
752,055 - SM_b21110 0.64 -4.0
752,213 + -0.5
752,213 + -4.6
752,214 - -6.2
752,254 - -4.7
752,274 + +0.5
752,274 + -3.9
752,275 - -4.6
752,275 - -4.2
752,714 + SM_b21111 0.67 -2.5
752,714 + SM_b21111 0.67 -4.2
752,715 - +0.5
752,718 + SM_b21111 0.68 -3.3
752,718 + SM_b21111 0.68 -1.6

Or see this region's nucleotide sequence