Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37430

Experiment: R2A with nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS37420 and RR42_RS37425 are separated by 106 nucleotidesRR42_RS37425 and RR42_RS37430 are separated by 107 nucleotidesRR42_RS37430 and RR42_RS37435 are separated by 1 nucleotides RR42_RS37420: RR42_RS37420 - AraC family transcriptional regulator, at 3,873,018 to 3,873,755 _RS37420 RR42_RS37425: RR42_RS37425 - hypothetical protein, at 3,873,862 to 3,874,140 _RS37425 RR42_RS37430: RR42_RS37430 - glutathione S-transferase, at 3,874,248 to 3,874,952 _RS37430 RR42_RS37435: RR42_RS37435 - elongation factor G, at 3,874,954 to 3,877,005 _RS37435 Position (kb) 3874 3875Strain fitness (log2 ratio) -2 -1 0 1at 3873.369 kb on + strand, within RR42_RS37420at 3873.369 kb on + strand, within RR42_RS37420at 3873.369 kb on + strand, within RR42_RS37420at 3873.733 kb on - strandat 3873.733 kb on - strandat 3873.733 kb on - strandat 3873.822 kb on + strandat 3873.822 kb on + strandat 3873.822 kb on + strandat 3873.822 kb on + strandat 3873.823 kb on - strandat 3873.823 kb on - strandat 3873.823 kb on - strandat 3873.823 kb on - strandat 3873.827 kb on + strandat 3873.828 kb on - strandat 3874.015 kb on + strand, within RR42_RS37425at 3874.015 kb on + strand, within RR42_RS37425at 3874.024 kb on + strand, within RR42_RS37425at 3874.024 kb on + strand, within RR42_RS37425at 3874.024 kb on + strand, within RR42_RS37425at 3874.024 kb on + strand, within RR42_RS37425at 3874.025 kb on - strand, within RR42_RS37425at 3874.025 kb on - strand, within RR42_RS37425at 3874.280 kb on + strandat 3874.280 kb on + strandat 3874.281 kb on - strandat 3874.281 kb on - strandat 3874.380 kb on + strand, within RR42_RS37430at 3874.419 kb on + strand, within RR42_RS37430at 3874.420 kb on - strand, within RR42_RS37430at 3874.534 kb on - strand, within RR42_RS37430at 3874.534 kb on - strand, within RR42_RS37430at 3874.584 kb on + strand, within RR42_RS37430at 3874.677 kb on + strand, within RR42_RS37430at 3874.705 kb on - strand, within RR42_RS37430at 3874.782 kb on + strand, within RR42_RS37430at 3874.836 kb on + strand, within RR42_RS37430at 3874.836 kb on + strand, within RR42_RS37430at 3874.837 kb on - strand, within RR42_RS37430at 3874.997 kb on + strandat 3874.998 kb on - strandat 3874.998 kb on - strandat 3874.998 kb on - strandat 3875.059 kb on - strandat 3875.061 kb on - strandat 3875.316 kb on - strand, within RR42_RS37435at 3875.510 kb on + strand, within RR42_RS37435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
remove
3,873,369 + RR42_RS37420 0.48 +0.7
3,873,369 + RR42_RS37420 0.48 -0.1
3,873,369 + RR42_RS37420 0.48 +0.3
3,873,733 - -0.2
3,873,733 - -1.6
3,873,733 - +0.2
3,873,822 + -0.4
3,873,822 + -0.3
3,873,822 + +0.9
3,873,822 + +0.3
3,873,823 - +0.0
3,873,823 - -0.9
3,873,823 - -0.1
3,873,823 - +0.2
3,873,827 + +0.0
3,873,828 - -1.8
3,874,015 + RR42_RS37425 0.55 +0.4
3,874,015 + RR42_RS37425 0.55 +0.6
3,874,024 + RR42_RS37425 0.58 +0.4
3,874,024 + RR42_RS37425 0.58 -0.3
3,874,024 + RR42_RS37425 0.58 +0.0
3,874,024 + RR42_RS37425 0.58 -0.2
3,874,025 - RR42_RS37425 0.58 +1.0
3,874,025 - RR42_RS37425 0.58 -0.3
3,874,280 + -0.3
3,874,280 + +0.4
3,874,281 - -1.0
3,874,281 - -1.6
3,874,380 + RR42_RS37430 0.19 -0.4
3,874,419 + RR42_RS37430 0.24 +1.2
3,874,420 - RR42_RS37430 0.24 -1.0
3,874,534 - RR42_RS37430 0.41 -0.6
3,874,534 - RR42_RS37430 0.41 -1.0
3,874,584 + RR42_RS37430 0.48 +0.7
3,874,677 + RR42_RS37430 0.61 +0.1
3,874,705 - RR42_RS37430 0.65 +0.0
3,874,782 + RR42_RS37430 0.76 +0.1
3,874,836 + RR42_RS37430 0.83 -0.6
3,874,836 + RR42_RS37430 0.83 -0.3
3,874,837 - RR42_RS37430 0.84 -0.0
3,874,997 + -1.1
3,874,998 - +0.0
3,874,998 - +0.2
3,874,998 - -0.6
3,875,059 - +1.0
3,875,061 - -0.1
3,875,316 - RR42_RS37435 0.18 -2.1
3,875,510 + RR42_RS37435 0.27 -2.0

Or see this region's nucleotide sequence