Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29275

Experiment: R2A with nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29270 and RR42_RS29275 are separated by 123 nucleotidesRR42_RS29275 and RR42_RS29280 are separated by 89 nucleotidesRR42_RS29280 and RR42_RS29285 are separated by 34 nucleotidesRR42_RS29285 and RR42_RS29290 are separated by 95 nucleotides RR42_RS29270: RR42_RS29270 - AraC family transcriptional regulator, at 1,920,528 to 1,921,379 _RS29270 RR42_RS29275: RR42_RS29275 - permease, at 1,921,503 to 1,922,312 _RS29275 RR42_RS29280: RR42_RS29280 - hypothetical protein, at 1,922,402 to 1,922,581 _RS29280 RR42_RS29285: RR42_RS29285 - hypothetical protein, at 1,922,616 to 1,923,041 _RS29285 RR42_RS29290: RR42_RS29290 - diguanylate cyclase, at 1,923,137 to 1,924,108 _RS29290 Position (kb) 1921 1922 1923Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1920.505 kb on + strandat 1920.506 kb on - strandat 1920.530 kb on - strandat 1920.628 kb on + strand, within RR42_RS29270at 1920.628 kb on + strand, within RR42_RS29270at 1920.629 kb on - strand, within RR42_RS29270at 1920.629 kb on - strand, within RR42_RS29270at 1920.836 kb on + strand, within RR42_RS29270at 1920.837 kb on - strand, within RR42_RS29270at 1920.837 kb on - strand, within RR42_RS29270at 1920.837 kb on - strand, within RR42_RS29270at 1920.939 kb on - strand, within RR42_RS29270at 1921.018 kb on + strand, within RR42_RS29270at 1921.019 kb on - strand, within RR42_RS29270at 1921.092 kb on - strand, within RR42_RS29270at 1921.092 kb on - strand, within RR42_RS29270at 1921.092 kb on - strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.126 kb on + strand, within RR42_RS29270at 1921.127 kb on - strand, within RR42_RS29270at 1921.127 kb on - strand, within RR42_RS29270at 1921.127 kb on - strand, within RR42_RS29270at 1921.127 kb on - strand, within RR42_RS29270at 1921.127 kb on - strand, within RR42_RS29270at 1921.355 kb on - strandat 1921.426 kb on + strandat 1921.426 kb on + strandat 1921.427 kb on - strandat 1921.462 kb on + strandat 1921.462 kb on + strandat 1921.463 kb on - strandat 1921.463 kb on - strandat 1921.463 kb on - strandat 1921.463 kb on - strandat 1921.466 kb on + strandat 1921.466 kb on + strandat 1921.466 kb on + strandat 1921.466 kb on + strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.467 kb on - strandat 1921.509 kb on + strandat 1921.509 kb on + strandat 1921.509 kb on + strandat 1921.510 kb on - strandat 1921.510 kb on - strandat 1921.510 kb on - strandat 1921.510 kb on - strandat 1921.510 kb on - strandat 1921.550 kb on + strandat 1921.600 kb on - strand, within RR42_RS29275at 1921.652 kb on + strand, within RR42_RS29275at 1921.653 kb on - strand, within RR42_RS29275at 1921.743 kb on + strand, within RR42_RS29275at 1921.743 kb on + strand, within RR42_RS29275at 1921.743 kb on + strand, within RR42_RS29275at 1921.743 kb on + strand, within RR42_RS29275at 1921.743 kb on + strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.744 kb on - strand, within RR42_RS29275at 1921.845 kb on + strand, within RR42_RS29275at 1921.845 kb on + strand, within RR42_RS29275at 1921.846 kb on - strand, within RR42_RS29275at 1921.846 kb on - strand, within RR42_RS29275at 1922.049 kb on - strand, within RR42_RS29275at 1922.103 kb on + strand, within RR42_RS29275at 1922.103 kb on + strand, within RR42_RS29275at 1922.104 kb on - strand, within RR42_RS29275at 1922.121 kb on + strand, within RR42_RS29275at 1922.157 kb on + strand, within RR42_RS29275at 1922.157 kb on + strand, within RR42_RS29275at 1922.157 kb on + strand, within RR42_RS29275at 1922.186 kb on - strand, within RR42_RS29275at 1922.265 kb on + strandat 1922.266 kb on - strandat 1922.310 kb on + strandat 1922.310 kb on + strandat 1922.364 kb on + strandat 1922.364 kb on + strandat 1922.364 kb on + strandat 1922.365 kb on - strandat 1922.365 kb on - strandat 1922.365 kb on - strandat 1922.365 kb on - strandat 1922.365 kb on - strandat 1922.365 kb on - strandat 1922.470 kb on + strand, within RR42_RS29280at 1922.618 kb on - strandat 1922.704 kb on + strand, within RR42_RS29285at 1922.857 kb on + strand, within RR42_RS29285at 1922.857 kb on + strand, within RR42_RS29285at 1922.857 kb on + strand, within RR42_RS29285at 1922.858 kb on - strand, within RR42_RS29285at 1922.920 kb on + strand, within RR42_RS29285at 1923.035 kb on + strandat 1923.080 kb on + strandat 1923.080 kb on + strandat 1923.081 kb on - strandat 1923.082 kb on + strandat 1923.082 kb on + strandat 1923.082 kb on + strandat 1923.083 kb on - strandat 1923.083 kb on - strandat 1923.083 kb on - strandat 1923.083 kb on - strandat 1923.174 kb on + strandat 1923.174 kb on + strandat 1923.174 kb on + strandat 1923.174 kb on + strandat 1923.175 kb on - strandat 1923.175 kb on - strandat 1923.175 kb on - strandat 1923.175 kb on - strandat 1923.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 200 mM
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1,920,505 + -1.2
1,920,506 - +0.3
1,920,530 - -1.0
1,920,628 + RR42_RS29270 0.12 -1.5
1,920,628 + RR42_RS29270 0.12 -1.8
1,920,629 - RR42_RS29270 0.12 -0.1
1,920,629 - RR42_RS29270 0.12 -0.5
1,920,836 + RR42_RS29270 0.36 -0.9
1,920,837 - RR42_RS29270 0.36 +0.2
1,920,837 - RR42_RS29270 0.36 +0.1
1,920,837 - RR42_RS29270 0.36 +0.1
1,920,939 - RR42_RS29270 0.48 -1.3
1,921,018 + RR42_RS29270 0.58 -0.3
1,921,019 - RR42_RS29270 0.58 -0.2
1,921,092 - RR42_RS29270 0.66 -0.3
1,921,092 - RR42_RS29270 0.66 -0.3
1,921,092 - RR42_RS29270 0.66 -1.0
1,921,126 + RR42_RS29270 0.70 -0.2
1,921,126 + RR42_RS29270 0.70 -0.5
1,921,126 + RR42_RS29270 0.70 -1.1
1,921,126 + RR42_RS29270 0.70 +0.2
1,921,126 + RR42_RS29270 0.70 -1.3
1,921,126 + RR42_RS29270 0.70 -1.8
1,921,127 - RR42_RS29270 0.70 -0.1
1,921,127 - RR42_RS29270 0.70 +0.3
1,921,127 - RR42_RS29270 0.70 -0.2
1,921,127 - RR42_RS29270 0.70 -0.7
1,921,127 - RR42_RS29270 0.70 -0.6
1,921,355 - -0.7
1,921,426 + +0.2
1,921,426 + +0.8
1,921,427 - -2.5
1,921,462 + -0.4
1,921,462 + -0.5
1,921,463 - +0.5
1,921,463 - -0.8
1,921,463 - +0.5
1,921,463 - -0.3
1,921,466 + +0.1
1,921,466 + -1.0
1,921,466 + +0.6
1,921,466 + +0.2
1,921,467 - +1.1
1,921,467 - +0.5
1,921,467 - -1.7
1,921,467 - +0.5
1,921,467 - +0.6
1,921,467 - -0.1
1,921,467 - -0.5
1,921,467 - -0.2
1,921,509 + +0.0
1,921,509 + -1.8
1,921,509 + +0.8
1,921,510 - -0.9
1,921,510 - +0.3
1,921,510 - -0.5
1,921,510 - +0.2
1,921,510 - -0.1
1,921,550 + +0.3
1,921,600 - RR42_RS29275 0.12 +1.1
1,921,652 + RR42_RS29275 0.18 +0.8
1,921,653 - RR42_RS29275 0.19 -0.2
1,921,743 + RR42_RS29275 0.30 -0.7
1,921,743 + RR42_RS29275 0.30 -0.3
1,921,743 + RR42_RS29275 0.30 +0.7
1,921,743 + RR42_RS29275 0.30 +0.5
1,921,743 + RR42_RS29275 0.30 +0.3
1,921,744 - RR42_RS29275 0.30 +0.5
1,921,744 - RR42_RS29275 0.30 +0.3
1,921,744 - RR42_RS29275 0.30 +0.1
1,921,744 - RR42_RS29275 0.30 +0.5
1,921,744 - RR42_RS29275 0.30 +0.1
1,921,744 - RR42_RS29275 0.30 +0.6
1,921,845 + RR42_RS29275 0.42 +0.3
1,921,845 + RR42_RS29275 0.42 -0.5
1,921,846 - RR42_RS29275 0.42 +2.7
1,921,846 - RR42_RS29275 0.42 +0.2
1,922,049 - RR42_RS29275 0.67 -0.4
1,922,103 + RR42_RS29275 0.74 -0.9
1,922,103 + RR42_RS29275 0.74 -0.2
1,922,104 - RR42_RS29275 0.74 +1.1
1,922,121 + RR42_RS29275 0.76 -0.7
1,922,157 + RR42_RS29275 0.81 -0.2
1,922,157 + RR42_RS29275 0.81 +0.1
1,922,157 + RR42_RS29275 0.81 +0.3
1,922,186 - RR42_RS29275 0.84 -0.5
1,922,265 + +2.8
1,922,266 - +0.0
1,922,310 + -0.4
1,922,310 + +0.2
1,922,364 + -0.2
1,922,364 + -1.2
1,922,364 + -0.9
1,922,365 - +0.4
1,922,365 - -0.4
1,922,365 - -0.5
1,922,365 - -0.8
1,922,365 - +0.1
1,922,365 - +0.1
1,922,470 + RR42_RS29280 0.38 -1.0
1,922,618 - -0.1
1,922,704 + RR42_RS29285 0.21 -1.1
1,922,857 + RR42_RS29285 0.57 -0.3
1,922,857 + RR42_RS29285 0.57 -0.8
1,922,857 + RR42_RS29285 0.57 -0.4
1,922,858 - RR42_RS29285 0.57 -2.3
1,922,920 + RR42_RS29285 0.71 -0.5
1,923,035 + +0.4
1,923,080 + -0.5
1,923,080 + -0.4
1,923,081 - -0.5
1,923,082 + -0.5
1,923,082 + -0.3
1,923,082 + -1.0
1,923,083 - -1.1
1,923,083 - -0.5
1,923,083 - -0.0
1,923,083 - +1.3
1,923,174 + +0.6
1,923,174 + -0.6
1,923,174 + +0.4
1,923,174 + +0.5
1,923,175 - -0.2
1,923,175 - -1.2
1,923,175 - +1.2
1,923,175 - -0.1
1,923,175 - +1.2

Or see this region's nucleotide sequence